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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:244.4 nTPM
HPA:244.4 nTPM
GTEx:280.7 nTPM
FANTOM5:56.3 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 244.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 230.3
2565 Male, age 75, midline 251.6
1981 Female, age 72, midline 246.3
2194 Female, age 79, both hemispheres 225.6
2816 Male, age 47, midline 224.3
2048 Male, age 55, midline 203.6
Cervical spinal cord, dorsal horn
nTPM: 207.3
2173 Female, age 72, unknown 241.3
2296 Male, age 66, both hemispheres 222.2
2069 Male, age 47, both hemispheres 211.0
1877 Male, age 55, unknown 208.0
2721 Male, age 90, both hemispheres 189.7
2297 Male, age 75, both hemispheres 171.7
Cervical spinal cord, ventral horn
nTPM: 244.4
2809 Male, age 90, both hemispheres 298.4
2480 Male, age 75, both hemispheres 276.9
2295 Male, age 66, both hemispheres 249.1
2068 Male, age 55, unknown 244.0
2098 Female, age 72, unknown 204.4
2820 Female, age 79, both hemispheres 193.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 280.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 280.7
Samples: 159

Max nTPM: 709.6
Min nTPM: 102.0
Std nTPM: 109.8
Median nTPM: 257.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 709.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 655.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 596.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 564.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 526.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 513.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 504.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 496.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 483.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 478.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 454.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 444.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 441.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 440.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 440.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 440.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 426.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 423.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 411.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 411.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 397.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 394.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 389.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 377.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 377.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 375.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 372.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 371.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 369.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 369.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 367.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 365.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 364.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 359.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 356.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 349.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 348.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 345.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 345.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 343.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 340.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 337.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 336.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 332.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 327.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 326.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 326.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 320.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 319.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 316.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 316.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 314.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 313.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 312.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 311.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 309.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 309.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 308.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 306.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 305.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 300.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 299.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 299.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 296.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 292.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 290.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 287.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 286.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 282.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 279.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 277.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 276.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 276.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 275.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 271.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 269.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 267.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 265.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 259.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 257.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 257.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 256.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 254.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 254.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 252.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 249.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 247.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 246.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 246.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 243.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 241.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 238.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 237.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 235.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 234.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 234.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 231.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 230.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 229.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 227.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 226.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 225.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 220.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 218.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 218.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 218.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 218.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 215.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 215.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 214.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 213.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 212.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 208.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 206.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 205.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 204.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 203.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 201.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 201.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 197.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 197.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 195.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 195.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 195.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 194.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 192.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 192.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 190.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 189.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 189.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 189.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 186.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 183.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 182.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 181.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 180.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 173.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 173.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 173.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 168.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 164.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 161.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 161.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 160.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 154.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 146.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 145.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 145.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 142.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 135.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 133.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 132.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 130.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 127.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 122.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 122.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 115.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 114.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 102.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 56.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 56.3
FF:10181-103D1 60 years, female 67.7
FF:10159-103A6 76 years, female 44.9

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