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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:355.3 nTPM
HPA:355.3 nTPM
GTEx:491.7 nTPM
FANTOM5:56.7 Scaled Tags Per Million
Pig:91.3 nTPM
Mouse:595.3 nTPM
Allen mouse:11.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 355.3
Sample id Sample description nTPM
Amygdala
nTPM: 352.6
2814 Male, age 76, right hemisphere 361.3
2517 Female, age 94, left hemisphere 356.8
2514 Male, age 75, right hemisphere 351.9
1987 Female, age 91, left hemisphere 350.7
2695 Female, age 67, right hemisphere 342.4
Basal amygdala
nTPM: 351.0
2110 Male, age 80, left hemisphere 359.3
2243 Female, age 91, right hemisphere 357.2
1955 Male, age 76, both hemispheres 356.9
2685 Female, age 94, left hemisphere 353.8
2609 Male, age 75, right hemisphere 353.1
2827 Female, age 67, right hemisphere 325.7
Central amygdala
nTPM: 355.3
2826 Female, age 94, left hemisphere 374.2
1905 Male, age 76, both hemispheres 361.7
2515 Male, age 75, right hemisphere 357.6
2239 Male, age 80, left hemisphere 350.8
2701 Female, age 91, right hemisphere 332.1
Corticomedial amygdala
nTPM: 354.3
2242 Female, age 91, right hemisphere 363.4
2829 Male, age 80, left hemisphere 363.0
2240 Male, age 76, both hemispheres 355.9
2429 Female, age 94, left hemisphere 355.3
2428 Male, age 75, right hemisphere 352.5
2535 Female, age 67, right hemisphere 335.6
Lateral amygdala
nTPM: 351.7
2534 Female, age 94, left hemisphere 377.3
2516 Male, age 75, right hemisphere 365.8
1883 Male, age 76, both hemispheres 349.0
2255 Female, age 91, right hemisphere 345.5
2256 Male, age 80, left hemisphere 340.6
2830 Female, age 67, right hemisphere 331.9
Stria terminalis, bed nucleus
nTPM: 346.9
1974 Female, age 91, both hemispheres 361.6
2201 Male, age 74, unknown 341.4
2486 Female, age 94, both hemispheres 337.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 491.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 491.7
Samples: 152

Max nTPM: 1459.9
Min nTPM: 184.3
Std nTPM: 191.1
Median nTPM: 455.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1459.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1395.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1303.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 987.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 968.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 919.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 892.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 857.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 814.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 769.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 749.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 706.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 702.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 687.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 687.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 681.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 676.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 652.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 631.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 629.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 629.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 621.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 618.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 614.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 611.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 610.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 594.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 594.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 590.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 588.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 587.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 584.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 581.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 580.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 577.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 570.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 567.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 567.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 551.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 550.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 537.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 534.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 533.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 533.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 531.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 530.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 530.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 518.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 508.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 504.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 500.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 498.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 495.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 492.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 491.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 491.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 489.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 487.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 487.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 486.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 481.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 480.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 479.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 479.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 478.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 475.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 475.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 473.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 472.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 469.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 467.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 466.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 463.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 462.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 458.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 456.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 455.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 454.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 450.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 449.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 448.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 447.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 446.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 445.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 443.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 441.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 440.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 435.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 434.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 433.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 432.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 429.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 429.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 426.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 419.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 415.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 410.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 406.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 403.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 402.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 401.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 401.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 400.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 399.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 398.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 397.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 395.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 394.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 394.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 390.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 387.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 383.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 376.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 373.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 372.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 371.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 370.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 365.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 365.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 364.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 362.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 362.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 361.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 359.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 358.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 358.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 354.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 344.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 338.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 338.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 334.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 330.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 328.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 323.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 318.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 317.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 317.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 313.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 305.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 303.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 299.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 296.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 293.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 288.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 281.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 281.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 281.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 273.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 254.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 246.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 238.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 184.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 56.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 56.7
FF:10151-102I7 76 years, female 56.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 91.3
Pig sample Sample description nTPM
Amygdala
nTPM: 91.3
Samples: 4

Max nTPM: 127.6
Min nTPM: 66.3
Sample A Female 127.6
Sample B Female 82.6
Sample C Male 88.5
Sample D Male 66.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 595.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 595.3
Samples: 4

Max nTPM: 655.2
Min nTPM: 548.9
Sample A Male 581.6
Sample B Male 548.9
Sample C Female 655.2
Sample D Female 595.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 11.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 11.1
74822929 Antisense, RP_060321_01_A02, Mouse strain C57BL/6J (56 days, male) 11.1

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