BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:41.3 nTPM
HPA:41.3 nTPM
GTEx:20.7 nTPM
FANTOM5:106.1 Scaled Tags Per Million
Pig:76.5 nTPM
Mouse:32.8 nTPM
Allen mouse:2.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA039402
Glial cells Not detected
Neuronal cells Low


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 41.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 18.2
2288 Male, age 75, left hemisphere 31.0
2846 Female, age 79, unknown 21.6
1854 Male, age 80, left hemisphere 16.9
1781 Male, age 74, unknown 16.4
2481 Female, age 94, left hemisphere 16.2
2290 Female, age 72, unknown 16.1
2289 Male, age 61, right hemisphere 14.8
1857 Female, age 85, left hemisphere 12.4
Claustrum
nTPM: 27.4
2292 Female, age 85, both hemispheres 42.2
2392 Female, age 94, both hemispheres 35.1
1956 Male, age 74, unknown 33.7
2491 Male, age 75, both hemispheres 25.5
2196 Female, age 79, unknown 23.7
2198 Male, age 80, both hemispheres 23.3
2284 Female, age 91, both hemispheres 23.1
2568 Male, age 61, both hemispheres 21.6
2645 Female, age 72, unknown 18.5
Globus pallidus, externus
nTPM: 36.8
2567 Female, age 72, unknown 49.0
1996 Male, age 80, right hemisphere 39.5
2395 Male, age 75, both hemispheres 34.2
2772 Female, age 79, unknown 30.9
2646 Male, age 61, right hemisphere 30.3
Globus pallidus, internus
nTPM: 41.3
2111 Female, age 85, right hemisphere 54.8
2287 Male, age 75, right hemisphere 47.1
2778 Female, age 91, both hemispheres 44.7
2566 Female, age 72, unknown 43.8
2483 Female, age 94, right hemisphere 33.6
1818 Male, age 74, unknown 32.6
2037 Male, age 80, right hemisphere 32.4
Nucleus accumbens
nTPM: 23.0
2391 Female, age 94, left hemisphere 40.3
2286 Male, age 75, left hemisphere 27.1
2698 Female, age 72, unknown 27.0
2732 Male, age 80, right hemisphere 23.9
1806 Female, age 85, left hemisphere 18.8
2824 Male, age 61, right hemisphere 18.0
1783 Male, age 74, unknown 16.8
1856 Female, age 91, right hemisphere 12.4
Nucleus basalis of Meynert
nTPM: 23.0
2569 Male, age 61, both hemispheres 27.4
2821 Male, age 75, both hemispheres 25.0
2393 Male, age 80, right hemisphere 20.3
2484 Female, age 94, left hemisphere 19.4
Nucleus of the diagonal band
nTPM: 13.3
2029 Male, age 61, right hemisphere 15.7
1979 Male, age 74, unknown 15.3
1812 Female, age 91, both hemispheres 12.0
2775 Male, age 80, right hemisphere 12.0
2195 Female, age 85, both hemispheres 11.7
Olfactory tubercle
nTPM: 15.0
2856 Male, age 75, right hemisphere 16.1
1998 Female, age 91, both hemispheres 15.7
2487 Female, age 94, left hemisphere 14.3
1846 Male, age 80, right hemisphere 13.9
Putamen
nTPM: 22.6
2647 Male, age 75, left hemisphere 30.6
1829 Male, age 74, unknown 26.5
2489 Female, age 72, unknown 24.7
2482 Female, age 94, left hemisphere 24.3
1937 Female, age 91, right hemisphere 20.9
2466 Female, age 79, unknown 18.9
1838 Male, age 80, right hemisphere 12.7
Septal nuclei
nTPM: 16.3
2394 Male, age 61, left hemisphere 26.8
2629 Female, age 94, right hemisphere 18.4
2199 Male, age 80, right hemisphere 16.9
2009 Female, age 91, both hemispheres 14.3
1960 Male, age 74, unknown 14.0
2031 Female, age 72, unknown 13.2
2059 Female, age 85, both hemispheres 10.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 20.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 16.2
Samples: 246

Max nTPM: 59.3
Min nTPM: 6.8
Std nTPM: 6.8
Median nTPM: 14.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 59.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 42.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 40.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 40.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 38.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 35.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 34.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 33.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 33.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 32.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 31.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 12.8
Samples: 246

Max nTPM: 69.0
Min nTPM: 5.1
Std nTPM: 6.7
Median nTPM: 10.9
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 69.0
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 51.0
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 38.0
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 35.6
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 32.5
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 30.6
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 30.5
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 30.4
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 29.5
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 28.5
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 27.3
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Brain - Putamen (basal ganglia)
Average nTPM: 20.7
Samples: 205

Max nTPM: 55.9
Min nTPM: 8.4
Std nTPM: 7.4
Median nTPM: 19.9
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 55.9
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 45.4
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 42.6
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 41.9
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 40.1
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 40.0
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 37.4
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 37.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 34.9
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 34.8
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 34.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 106.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 48.7
FF:10164-103B2 76 years, female 48.7
Globus pallidus
Scaled Tags Per Million: 106.1
FF:10161-103A8 76 years, female 153.0
FF:10175-103C4 60 years, female 59.2
Nucleus accumbens
Scaled Tags Per Million: 40.8
FF:10037-101F1 23-56 years, mixed 40.8
Putamen
Scaled Tags Per Million: 58.2
FF:10176-103C5 60 years, female 58.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 76.5
Pig sample Sample description nTPM
Caudate
nTPM: 32.5
Samples: 4

Max nTPM: 35.8
Min nTPM: 27.7
Sample A Female 35.8
Sample B Female 27.7
Sample C Male 32.4
Sample D Male 34.2
Putamen
nTPM: 76.6
Samples: 4

Max nTPM: 115.7
Min nTPM: 42.7
Sample A Female 115.7
Sample B Female 42.7
Sample C Male 71.2
Sample D Male 76.6
Septum
nTPM: 49.0
Samples: 4

Max nTPM: 58.0
Min nTPM: 34.8
Sample A Female 58.0
Sample B Female 34.8
Sample C Male 53.2
Sample D Male 49.8
Ventral pallidum
nTPM: 62.9
Samples: 4

Max nTPM: 81.4
Min nTPM: 43.2
Sample A Female 43.2
Sample B Female 48.1
Sample C Male 81.4
Sample D Male 78.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 32.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 32.8
Samples: 4

Max nTPM: 33.7
Min nTPM: 31.1
Sample A Male 33.3
Sample B Male 31.1
Sample C Female 33.1
Sample D Female 33.7
Septum
nTPM: 28.6
Samples: 4

Max nTPM: 38.3
Min nTPM: 22.6
Sample A Male 27.3
Sample B Male 22.6
Sample C Female 26.0
Sample D Female 38.3
Ventral forebrain
nTPM: 24.4
Samples: 4

Max nTPM: 28.1
Min nTPM: 20.2
Sample A Male 28.1
Sample B Male 22.7
Sample C Female 20.2
Sample D Female 26.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.2
77790746 Antisense, RP_070208_04_B11, Mouse strain C57BL/6J (56 days, male) 2.6
68843781 Antisense, RP_050217_02_C03, Mouse strain C57BL/6J (56 days, male) 2.1
77280311 Antisense, RP_070116_01_B02, Mouse strain C57BL/6J (56 days, male) 1.9
Pallidum
Expression energy: 2.9
68843781 Antisense, RP_050217_02_C03, Mouse strain C57BL/6J (56 days, male) 3.1
77790746 Antisense, RP_070208_04_B11, Mouse strain C57BL/6J (56 days, male) 2.8
77280311 Antisense, RP_070116_01_B02, Mouse strain C57BL/6J (56 days, male) 2.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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