MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:27.7 nTPM
HPA:27.7 nTPM
GTEx:17.5 nTPM
FANTOM5:24.3 Scaled Tags Per Million
Pig:57.6 nTPM
Mouse:67.5 nTPM
Allen mouse:7.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.8
2411 Female, age 72, unknown 26.5
1870 Female, age 42, unknown 25.3
1830 Male, age 51, unknown 24.1
1833 Male, age 53, unknown 22.3
1827 Male, age 72, unknown 20.4
2828 Female, age 72, unknown 19.3
2019 Male, age 18, unknown 16.6
2219 Male, age 76, both hemispheres 16.4
2666 Male, age 74, left hemisphere 15.5
2586 Male, age 75, left hemisphere 11.2
Dorsal raphe nucleus
nTPM: 21.7
2750 Male, age 76, both hemispheres 28.6
2298 Female, age 72, unknown 22.7
2047 Male, age 72, unknown 21.2
1828 Male, age 53, unknown 18.8
2016 Female, age 72, unknown 17.3
Inferior colliculus
nTPM: 17.9
1848 Female, age 42, unknown 19.8
2097 Female, age 72, unknown 18.6
2849 Male, age 72, unknown 17.3
1890 Male, age 53, unknown 16.0
Median raphe nucleus
nTPM: 27.7
2220 Male, age 76, midline 27.7
Pedunculopontine tegmental nucleus
nTPM: 23.5
1921 Female, age 85, both hemispheres 27.0
2334 Male, age 80, both hemispheres 25.6
2338 Male, age 61, both hemispheres 18.1
Periaquaductal grey, anterior
nTPM: 20.7
1947 Male, age 18, unknown 24.0
2502 Female, age 75, unknown 21.7
1795 Male, age 51, unknown 16.3
Periaquaductal grey, dorsal
nTPM: 17.7
2850 Male, age 76, both hemispheres 21.3
2464 Female, age 72, unknown 19.4
1831 Male, age 72, unknown 16.2
1840 Male, age 53, unknown 13.8
Periaquaductal grey, lateral
nTPM: 19.9
2272 Male, age 74, both hemispheres 23.6
2053 Male, age 18, unknown 19.7
2140 Male, age 76, both hemispheres 16.4
Pretectal area
nTPM: 18.4
2273 Male, age 74, both hemispheres 23.6
2825 Male, age 18, unknown 21.5
1815 Male, age 53, unknown 20.2
2007 Male, age 72, unknown 19.0
2224 Female, age 72, unknown 18.7
2667 Female, age 75, unknown 18.3
1817 Female, age 42, unknown 17.8
2316 Male, age 76, right hemisphere 17.8
2407 Male, age 75, both hemispheres 16.5
1816 Male, age 51, unknown 16.0
1944 Female, age 72, unknown 13.5
Red nucleus
nTPM: 19.2
1865 Male, age 51, unknown 25.6
1821 Female, age 72, unknown 23.0
1904 Male, age 53, unknown 20.8
1954 Female, age 42, unknown 20.3
2503 Female, age 72, unknown 19.5
2785 Male, age 18, unknown 18.9
2588 Male, age 74, left hemisphere 18.5
2769 Male, age 72, unknown 18.3
2227 Male, age 72, unknown 18.2
2725 Female, age 75, unknown 17.3
2823 Male, age 76, right hemisphere 16.9
2584 Male, age 75, left hemisphere 13.5
Substantia nigra
nTPM: 13.2
1889 Female, age 72, unknown 17.6
1941 Male, age 53, unknown 16.7
1916 Female, age 42, unknown 14.8
2241 Male, age 72, unknown 13.5
2590 Female, age 75, unknown 13.0
2583 Male, age 75, right hemisphere 12.3
1851 Male, age 51, unknown 11.9
2409 Female, age 72, unknown 11.2
2665 Male, age 74, both hemispheres 10.7
2699 Male, age 18, unknown 10.4
Superior colliculus
nTPM: 18.2
2587 Male, age 74, left hemisphere 21.7
1895 Male, age 76, right hemisphere 20.4
1839 Male, age 51, unknown 20.3
2261 Male, age 18, unknown 19.2
1995 Male, age 72, unknown 18.8
2668 Female, age 75, unknown 18.5
1913 Female, age 42, unknown 18.4
1796 Male, age 53, unknown 16.7
2087 Female, age 72, unknown 14.6
2664 Male, age 75, both hemispheres 13.9
Ventral tegmental area
nTPM: 18.7
2223 Female, age 72, unknown 26.1
2218 Male, age 76, both hemispheres 19.6
2410 Female, age 72, unknown 18.9
2021 Male, age 53, unknown 17.5
1942 Male, age 51, unknown 15.3
1915 Female, age 42, unknown 14.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.5
Samples: 139

Max nTPM: 40.3
Min nTPM: 4.5
Std nTPM: 8.0
Median nTPM: 15.8
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 40.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 39.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 39.6
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 39.2
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 37.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 35.3
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 33.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 33.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 33.1
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 32.3
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 32.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.3
FF:10158-103A5 76 years, female 24.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 57.6
Pig sample Sample description nTPM
Midbrain
nTPM: 57.6
Samples: 4

Max nTPM: 97.2
Min nTPM: 41.1
Sample A Female 97.2
Sample B Female 48.7
Sample C Male 43.3
Sample D Male 41.1
Periaqueductal gray
nTPM: 47.2
Samples: 3

Max nTPM: 52.7
Min nTPM: 42.5
Sample B Female 46.3
Sample C Male 52.7
Sample D Male 42.5
Substantia nigra
nTPM: 49.8
Samples: 4

Max nTPM: 59.3
Min nTPM: 37.6
Sample A Female 59.3
Sample B Female 37.6
Sample C Male 51.3
Sample D Male 50.9
Superior colliculi
nTPM: 44.0
Samples: 4

Max nTPM: 49.0
Min nTPM: 36.6
Sample A Female 49.0
Sample B Female 36.6
Sample C Male 45.9
Sample D Male 44.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 67.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 67.5
Samples: 4

Max nTPM: 69.8
Min nTPM: 66.1
Sample A Male 66.1
Sample B Male 67.0
Sample C Female 66.9
Sample D Female 69.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.8
69262284 Antisense, RP_050303_01_E12, Mouse strain C57BL/6J (56 days, male) 7.8
70231996 Antisense, RP_050303_01_E12, Mouse strain C57BL/6J (56 days, male) 3.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.