MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:184.1 nTPM
HPA:184.1 nTPM
GTEx:204.1 nTPM
FANTOM5:116.0 Scaled Tags Per Million
Pig:72.3 nTPM
Mouse:132.7 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 184.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 177.8
2586 Male, age 75, left hemisphere 192.2
2666 Male, age 74, left hemisphere 186.8
2019 Male, age 18, unknown 182.9
1870 Female, age 42, unknown 181.5
2411 Female, age 72, unknown 179.7
2828 Female, age 72, unknown 179.6
1827 Male, age 72, unknown 178.9
1833 Male, age 53, unknown 167.6
1830 Male, age 51, unknown 167.3
2219 Male, age 76, both hemispheres 161.6
Dorsal raphe nucleus
nTPM: 182.1
2016 Female, age 72, unknown 196.6
2298 Female, age 72, unknown 186.1
2047 Male, age 72, unknown 178.6
1828 Male, age 53, unknown 175.9
2750 Male, age 76, both hemispheres 173.4
Inferior colliculus
nTPM: 175.3
1890 Male, age 53, unknown 183.1
2097 Female, age 72, unknown 181.9
1848 Female, age 42, unknown 172.9
2849 Male, age 72, unknown 163.4
Median raphe nucleus
nTPM: 168.5
2220 Male, age 76, midline 168.5
Pedunculopontine tegmental nucleus
nTPM: 169.8
2334 Male, age 80, both hemispheres 179.3
1921 Female, age 85, both hemispheres 172.5
2338 Male, age 61, both hemispheres 157.7
Periaquaductal grey, anterior
nTPM: 180.2
2502 Female, age 75, unknown 184.4
1947 Male, age 18, unknown 181.9
1795 Male, age 51, unknown 174.3
Periaquaductal grey, dorsal
nTPM: 180.5
2850 Male, age 76, both hemispheres 190.7
1840 Male, age 53, unknown 182.5
2464 Female, age 72, unknown 176.6
1831 Male, age 72, unknown 172.3
Periaquaductal grey, lateral
nTPM: 172.7
2140 Male, age 76, both hemispheres 181.7
2053 Male, age 18, unknown 177.6
2272 Male, age 74, both hemispheres 158.8
Pretectal area
nTPM: 182.0
1816 Male, age 51, unknown 197.1
2007 Male, age 72, unknown 196.0
1815 Male, age 53, unknown 193.6
1817 Female, age 42, unknown 190.9
1944 Female, age 72, unknown 188.6
2316 Male, age 76, right hemisphere 183.4
2224 Female, age 72, unknown 175.2
2825 Male, age 18, unknown 170.8
2273 Male, age 74, both hemispheres 170.4
2667 Female, age 75, unknown 168.3
2407 Male, age 75, both hemispheres 167.8
Red nucleus
nTPM: 178.6
1821 Female, age 72, unknown 193.5
2503 Female, age 72, unknown 190.5
1865 Male, age 51, unknown 180.8
1904 Male, age 53, unknown 180.0
2725 Female, age 75, unknown 179.8
2785 Male, age 18, unknown 178.8
2588 Male, age 74, left hemisphere 177.0
2584 Male, age 75, left hemisphere 175.3
1954 Female, age 42, unknown 174.9
2769 Male, age 72, unknown 174.0
2227 Male, age 72, unknown 172.7
2823 Male, age 76, right hemisphere 165.9
Substantia nigra
nTPM: 184.1
1851 Male, age 51, unknown 193.6
2241 Male, age 72, unknown 193.5
2590 Female, age 75, unknown 187.2
1889 Female, age 72, unknown 185.7
2583 Male, age 75, right hemisphere 185.0
1916 Female, age 42, unknown 183.7
2699 Male, age 18, unknown 180.9
1941 Male, age 53, unknown 178.3
2665 Male, age 74, both hemispheres 176.9
2409 Female, age 72, unknown 176.0
Superior colliculus
nTPM: 180.0
1995 Male, age 72, unknown 192.3
1913 Female, age 42, unknown 185.6
2668 Female, age 75, unknown 184.9
2087 Female, age 72, unknown 181.2
2587 Male, age 74, left hemisphere 179.7
2261 Male, age 18, unknown 179.3
2664 Male, age 75, both hemispheres 179.1
1796 Male, age 53, unknown 177.8
1839 Male, age 51, unknown 171.7
1895 Male, age 76, right hemisphere 168.4
Ventral tegmental area
nTPM: 178.6
1915 Female, age 42, unknown 184.3
2410 Female, age 72, unknown 183.9
2021 Male, age 53, unknown 178.8
1942 Male, age 51, unknown 178.7
2223 Female, age 72, unknown 176.0
2218 Male, age 76, both hemispheres 170.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 204.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 204.1
Samples: 139

Max nTPM: 342.6
Min nTPM: 132.8
Std nTPM: 47.1
Median nTPM: 195.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 342.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 329.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 321.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 316.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 305.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 305.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 304.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 295.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 295.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 294.8
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 293.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 116.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 116.0
FF:10158-103A5 76 years, female 116.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 72.3
Pig sample Sample description nTPM
Midbrain
nTPM: 72.3
Samples: 4

Max nTPM: 83.1
Min nTPM: 64.0
Sample A Female 83.1
Sample B Female 67.2
Sample C Male 74.9
Sample D Male 64.0
Periaqueductal gray
nTPM: 56.8
Samples: 3

Max nTPM: 64.4
Min nTPM: 50.4
Sample B Female 55.5
Sample C Male 64.4
Sample D Male 50.4
Substantia nigra
nTPM: 63.0
Samples: 4

Max nTPM: 77.7
Min nTPM: 52.4
Sample A Female 77.7
Sample B Female 52.4
Sample C Male 61.4
Sample D Male 60.3
Superior colliculi
nTPM: 66.1
Samples: 4

Max nTPM: 74.7
Min nTPM: 52.3
Sample A Female 74.7
Sample B Female 52.3
Sample C Male 71.5
Sample D Male 65.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 132.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 132.7
Samples: 4

Max nTPM: 134.3
Min nTPM: 131.3
Sample A Male 131.3
Sample B Male 134.3
Sample C Female 133.7
Sample D Female 131.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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