BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:5.1 nTPM
HPA:5.1 nTPM
GTEx:14.7 nTPM
FANTOM5:22.8 Scaled Tags Per Million
Pig:9.9 nTPM
Mouse:18.6 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 2.9
2481 Female, age 94, left hemisphere 3.5
2846 Female, age 79, unknown 3.2
2288 Male, age 75, left hemisphere 3.0
2289 Male, age 61, right hemisphere 2.9
1857 Female, age 85, left hemisphere 2.8
2290 Female, age 72, unknown 2.7
1781 Male, age 74, unknown 2.6
1854 Male, age 80, left hemisphere 2.6
Claustrum
nTPM: 3.2
2292 Female, age 85, both hemispheres 4.5
1956 Male, age 74, unknown 3.8
2196 Female, age 79, unknown 3.7
2568 Male, age 61, both hemispheres 3.3
2198 Male, age 80, both hemispheres 2.9
2491 Male, age 75, both hemispheres 2.9
2645 Female, age 72, unknown 2.8
2284 Female, age 91, both hemispheres 2.6
2392 Female, age 94, both hemispheres 2.3
Globus pallidus, externus
nTPM: 5.1
1996 Male, age 80, right hemisphere 6.7
2646 Male, age 61, right hemisphere 5.4
2772 Female, age 79, unknown 4.6
2395 Male, age 75, both hemispheres 4.4
2567 Female, age 72, unknown 4.4
Globus pallidus, internus
nTPM: 4.9
2287 Male, age 75, right hemisphere 5.4
2778 Female, age 91, both hemispheres 5.4
2483 Female, age 94, right hemisphere 5.2
2566 Female, age 72, unknown 4.9
2037 Male, age 80, right hemisphere 4.8
2111 Female, age 85, right hemisphere 4.6
1818 Male, age 74, unknown 4.3
Nucleus accumbens
nTPM: 3.1
2698 Female, age 72, unknown 4.1
2391 Female, age 94, left hemisphere 3.5
2732 Male, age 80, right hemisphere 3.3
1856 Female, age 91, right hemisphere 3.0
1783 Male, age 74, unknown 2.9
2286 Male, age 75, left hemisphere 2.9
1806 Female, age 85, left hemisphere 2.8
2824 Male, age 61, right hemisphere 2.0
Nucleus basalis of Meynert
nTPM: 3.5
2569 Male, age 61, both hemispheres 6.1
2821 Male, age 75, both hemispheres 3.0
2484 Female, age 94, left hemisphere 2.7
2393 Male, age 80, right hemisphere 2.4
Nucleus of the diagonal band
nTPM: 2.2
1979 Male, age 74, unknown 2.5
1812 Female, age 91, both hemispheres 2.4
2195 Female, age 85, both hemispheres 2.0
2029 Male, age 61, right hemisphere 1.9
2775 Male, age 80, right hemisphere 1.9
Olfactory tubercle
nTPM: 1.9
1998 Female, age 91, both hemispheres 2.1
2856 Male, age 75, right hemisphere 2.0
1846 Male, age 80, right hemisphere 1.8
2487 Female, age 94, left hemisphere 1.6
Putamen
nTPM: 3.0
1829 Male, age 74, unknown 3.5
2647 Male, age 75, left hemisphere 3.5
2482 Female, age 94, left hemisphere 3.4
2489 Female, age 72, unknown 3.4
2466 Female, age 79, unknown 2.6
1937 Female, age 91, right hemisphere 2.5
1838 Male, age 80, right hemisphere 2.3
Septal nuclei
nTPM: 2.4
2394 Male, age 61, left hemisphere 2.9
2199 Male, age 80, right hemisphere 2.6
2629 Female, age 94, right hemisphere 2.6
2059 Female, age 85, both hemispheres 2.5
2031 Female, age 72, unknown 2.3
2009 Female, age 91, both hemispheres 2.1
1960 Male, age 74, unknown 1.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 14.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 11.7
Samples: 246

Max nTPM: 21.7
Min nTPM: 3.6
Std nTPM: 2.7
Median nTPM: 11.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 21.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 21.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 18.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 18.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 17.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 17.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 17.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 17.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 16.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 16.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 16.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 10.9
Samples: 246

Max nTPM: 24.9
Min nTPM: 4.8
Std nTPM: 3.0
Median nTPM: 10.3
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 24.9
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 23.3
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 23.1
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 19.4
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 19.2
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 17.9
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 17.8
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 17.8
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 17.4
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 17.3
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 17.1
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Brain - Putamen (basal ganglia)
Average nTPM: 14.7
Samples: 205

Max nTPM: 28.1
Min nTPM: 5.4
Std nTPM: 3.6
Median nTPM: 14.1
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 28.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 27.3
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 25.6
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 24.8
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 23.9
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 22.4
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 22.1
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 22.0
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 21.8
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 21.7
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 21.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 17.4
FF:10164-103B2 76 years, female 17.4
Globus pallidus
Scaled Tags Per Million: 22.8
FF:10161-103A8 76 years, female 32.3
FF:10175-103C4 60 years, female 13.4
Nucleus accumbens
Scaled Tags Per Million: 15.1
FF:10037-101F1 23-56 years, mixed 15.1
Putamen
Scaled Tags Per Million: 14.9
FF:10176-103C5 60 years, female 14.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 9.9
Pig sample Sample description nTPM
Caudate
nTPM: 9.4
Samples: 4

Max nTPM: 10.8
Min nTPM: 8.1
Sample A Female 8.1
Sample B Female 10.3
Sample C Male 10.8
Sample D Male 8.5
Putamen
nTPM: 9.9
Samples: 4

Max nTPM: 11.6
Min nTPM: 7.6
Sample A Female 10.0
Sample B Female 7.6
Sample C Male 11.6
Sample D Male 10.3
Septum
nTPM: 9.3
Samples: 4

Max nTPM: 10.2
Min nTPM: 7.4
Sample A Female 9.7
Sample B Female 7.4
Sample C Male 10.2
Sample D Male 9.9
Ventral pallidum
nTPM: 9.2
Samples: 4

Max nTPM: 11.0
Min nTPM: 8.0
Sample A Female 8.0
Sample B Female 9.2
Sample C Male 11.0
Sample D Male 8.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 18.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 13.5
Samples: 4

Max nTPM: 17.3
Min nTPM: 9.5
Sample A Male 14.6
Sample B Male 17.3
Sample C Female 9.5
Sample D Female 12.7
Septum
nTPM: 18.6
Samples: 4

Max nTPM: 22.1
Min nTPM: 15.7
Sample A Male 17.0
Sample B Male 19.6
Sample C Female 22.1
Sample D Female 15.7
Ventral forebrain
nTPM: 16.6
Samples: 4

Max nTPM: 20.2
Min nTPM: 13.4
Sample A Male 20.2
Sample B Male 15.7
Sample C Female 17.2
Sample D Female 13.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
69549166 Antisense, RP_050118_01_A02, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.1
69549166 Antisense, RP_050118_01_A02, Mouse strain C57BL/6J (56 days, male) 0.1

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