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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:209.7 nTPM
HPA:209.7 nTPM
GTEx:348.2 nTPM
FANTOM5:450.3 Scaled Tags Per Million
Pig:99.1 nTPM
Mouse:491.8 nTPM
Allen mouse:1.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 209.7
Sample id Sample description nTPM
Amygdala
nTPM: 168.9
2814 Male, age 76, right hemisphere 269.2
2514 Male, age 75, right hemisphere 190.1
2517 Female, age 94, left hemisphere 151.6
2695 Female, age 67, right hemisphere 127.5
1987 Female, age 91, left hemisphere 105.9
Basal amygdala
nTPM: 170.3
2110 Male, age 80, left hemisphere 242.3
2685 Female, age 94, left hemisphere 201.2
2243 Female, age 91, right hemisphere 176.2
1955 Male, age 76, both hemispheres 169.1
2827 Female, age 67, right hemisphere 124.4
2609 Male, age 75, right hemisphere 108.8
Central amygdala
nTPM: 166.4
2239 Male, age 80, left hemisphere 253.1
1905 Male, age 76, both hemispheres 197.4
2826 Female, age 94, left hemisphere 167.3
2701 Female, age 91, right hemisphere 130.0
2515 Male, age 75, right hemisphere 83.9
Corticomedial amygdala
nTPM: 143.8
2429 Female, age 94, left hemisphere 190.4
2829 Male, age 80, left hemisphere 187.2
2240 Male, age 76, both hemispheres 149.7
2242 Female, age 91, right hemisphere 132.3
2535 Female, age 67, right hemisphere 119.0
2428 Male, age 75, right hemisphere 84.5
Lateral amygdala
nTPM: 181.0
2534 Female, age 94, left hemisphere 263.3
2256 Male, age 80, left hemisphere 206.2
1883 Male, age 76, both hemispheres 201.0
2516 Male, age 75, right hemisphere 146.2
2830 Female, age 67, right hemisphere 134.8
2255 Female, age 91, right hemisphere 134.3
Stria terminalis, bed nucleus
nTPM: 209.7
2486 Female, age 94, both hemispheres 257.7
1974 Female, age 91, both hemispheres 223.2
2201 Male, age 74, unknown 148.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 348.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 348.2
Samples: 152

Max nTPM: 998.2
Min nTPM: 21.4
Std nTPM: 153.5
Median nTPM: 320.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 998.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 829.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 765.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 763.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 697.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 686.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 661.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 617.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 612.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 605.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 602.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 588.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 577.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 560.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 554.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 551.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 539.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 529.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 512.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 506.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 505.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 502.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 501.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 496.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 489.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 487.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 483.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 479.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 474.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 466.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 465.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 464.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 464.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 459.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 450.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 448.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 442.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 441.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 433.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 421.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 420.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 406.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 403.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 399.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 399.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 398.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 390.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 382.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 382.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 381.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 380.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 379.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 378.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 375.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 374.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 365.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 365.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 354.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 353.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 353.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 353.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 351.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 344.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 341.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 340.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 336.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 334.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 333.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 333.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 328.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 327.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 326.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 325.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 323.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 323.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 322.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 318.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 317.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 315.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 315.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 313.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 311.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 309.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 309.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 305.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 302.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 301.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 301.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 300.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 295.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 292.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 291.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 291.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 286.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 285.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 283.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 283.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 279.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 276.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 275.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 275.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 274.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 269.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 265.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 264.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 264.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 264.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 262.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 257.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 256.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 255.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 255.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 254.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 251.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 250.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 250.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 242.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 222.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 222.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 219.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 218.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 217.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 215.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 214.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 212.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 212.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 212.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 209.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 206.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 204.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 201.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 197.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 195.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 190.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 185.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 183.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 180.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 180.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 178.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 171.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 164.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 158.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 149.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 146.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 145.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 144.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 143.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 140.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 123.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 117.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 109.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 21.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 450.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 450.3
FF:10151-102I7 76 years, female 450.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 99.1
Pig sample Sample description nTPM
Amygdala
nTPM: 99.2
Samples: 4

Max nTPM: 118.4
Min nTPM: 78.4
Sample A Female 104.3
Sample B Female 118.4
Sample C Male 95.5
Sample D Male 78.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 491.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 491.8
Samples: 4

Max nTPM: 539.4
Min nTPM: 444.2
Sample A Male 539.4
Sample B Male 444.2
Sample C Female 529.9
Sample D Female 453.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.1
1082 Antisense, RP_Baylor_103091, Mouse strain C57BL/6J (56 days, male) 1.1
1081 Antisense, RP_Baylor_103091, Mouse strain C57BL/6J (56 days, male) 0.9

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