MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:254.4 nTPM
HPA:254.4 nTPM
GTEx:459.5 nTPM
FANTOM5:1916.3 Scaled Tags Per Million
Pig:344.2 nTPM
Mouse:728.7 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 254.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 220.2
2219 Male, age 76, both hemispheres 322.4
2411 Female, age 72, unknown 297.7
1830 Male, age 51, unknown 249.8
1833 Male, age 53, unknown 243.1
1870 Female, age 42, unknown 240.5
2828 Female, age 72, unknown 202.1
2019 Male, age 18, unknown 200.1
1827 Male, age 72, unknown 177.4
2666 Male, age 74, left hemisphere 165.8
2586 Male, age 75, left hemisphere 103.4
Dorsal raphe nucleus
nTPM: 145.0
2750 Male, age 76, both hemispheres 305.8
1828 Male, age 53, unknown 143.4
2047 Male, age 72, unknown 95.9
2016 Female, age 72, unknown 90.2
2298 Female, age 72, unknown 89.9
Inferior colliculus
nTPM: 120.2
2849 Male, age 72, unknown 175.2
1848 Female, age 42, unknown 125.0
2097 Female, age 72, unknown 91.3
1890 Male, age 53, unknown 89.2
Median raphe nucleus
nTPM: 215.0
2220 Male, age 76, midline 215.0
Pedunculopontine tegmental nucleus
nTPM: 237.8
2334 Male, age 80, both hemispheres 271.2
2338 Male, age 61, both hemispheres 237.2
1921 Female, age 85, both hemispheres 204.9
Periaquaductal grey, anterior
nTPM: 120.9
1947 Male, age 18, unknown 135.9
1795 Male, age 51, unknown 131.8
2502 Female, age 75, unknown 95.1
Periaquaductal grey, dorsal
nTPM: 75.7
2464 Female, age 72, unknown 134.0
1831 Male, age 72, unknown 89.0
1840 Male, age 53, unknown 48.7
2850 Male, age 76, both hemispheres 31.1
Periaquaductal grey, lateral
nTPM: 94.3
2272 Male, age 74, both hemispheres 164.6
2053 Male, age 18, unknown 99.0
2140 Male, age 76, both hemispheres 19.4
Pretectal area
nTPM: 156.1
2407 Male, age 75, both hemispheres 213.8
1815 Male, age 53, unknown 192.6
2007 Male, age 72, unknown 187.3
1817 Female, age 42, unknown 180.6
1816 Male, age 51, unknown 157.9
1944 Female, age 72, unknown 147.4
2825 Male, age 18, unknown 146.3
2667 Female, age 75, unknown 144.2
2224 Female, age 72, unknown 119.7
2273 Male, age 74, both hemispheres 118.7
2316 Male, age 76, right hemisphere 109.0
Red nucleus
nTPM: 254.4
2823 Male, age 76, right hemisphere 315.5
2503 Female, age 72, unknown 274.0
1904 Male, age 53, unknown 267.2
1821 Female, age 72, unknown 261.1
2588 Male, age 74, left hemisphere 261.0
2227 Male, age 72, unknown 256.4
2769 Male, age 72, unknown 254.2
1865 Male, age 51, unknown 251.8
2785 Male, age 18, unknown 245.6
2584 Male, age 75, left hemisphere 236.6
2725 Female, age 75, unknown 233.0
1954 Female, age 42, unknown 196.7
Substantia nigra
nTPM: 193.6
1941 Male, age 53, unknown 243.5
1916 Female, age 42, unknown 239.6
2583 Male, age 75, right hemisphere 230.3
2590 Female, age 75, unknown 221.2
1851 Male, age 51, unknown 220.6
2699 Male, age 18, unknown 211.6
1889 Female, age 72, unknown 194.3
2409 Female, age 72, unknown 179.4
2241 Male, age 72, unknown 119.5
2665 Male, age 74, both hemispheres 76.0
Superior colliculus
nTPM: 182.5
1913 Female, age 42, unknown 275.0
2587 Male, age 74, left hemisphere 239.2
1995 Male, age 72, unknown 209.5
2668 Female, age 75, unknown 209.1
1796 Male, age 53, unknown 188.0
1895 Male, age 76, right hemisphere 183.7
1839 Male, age 51, unknown 164.1
2261 Male, age 18, unknown 145.9
2087 Female, age 72, unknown 145.8
2664 Male, age 75, both hemispheres 64.6
Ventral tegmental area
nTPM: 224.3
2223 Female, age 72, unknown 344.4
2410 Female, age 72, unknown 257.8
2218 Male, age 76, both hemispheres 254.8
1915 Female, age 42, unknown 187.3
1942 Male, age 51, unknown 152.5
2021 Male, age 53, unknown 148.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 459.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 459.5
Samples: 139

Max nTPM: 1323.0
Min nTPM: 94.3
Std nTPM: 234.9
Median nTPM: 429.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 1323.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1290.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 1226.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1026.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1013.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 960.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 945.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 922.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 913.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 904.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 901.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1916.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1916.3
FF:10158-103A5 76 years, female 1916.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 344.2
Pig sample Sample description nTPM
Midbrain
nTPM: 344.2
Samples: 4

Max nTPM: 679.5
Min nTPM: 193.9
Sample A Female 679.5
Sample B Female 290.9
Sample C Male 212.3
Sample D Male 193.9
Periaqueductal gray
nTPM: 210.8
Samples: 3

Max nTPM: 236.1
Min nTPM: 174.6
Sample B Female 236.1
Sample C Male 174.6
Sample D Male 221.8
Substantia nigra
nTPM: 318.0
Samples: 4

Max nTPM: 510.1
Min nTPM: 161.5
Sample A Female 317.4
Sample B Female 161.5
Sample C Male 282.9
Sample D Male 510.1
Superior colliculi
nTPM: 259.4
Samples: 4

Max nTPM: 340.4
Min nTPM: 117.4
Sample A Female 303.1
Sample B Female 117.4
Sample C Male 276.5
Sample D Male 340.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 728.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 728.7
Samples: 4

Max nTPM: 783.1
Min nTPM: 697.5
Sample A Male 783.1
Sample B Male 697.5
Sample C Female 709.8
Sample D Female 724.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
1081 Antisense, RP_Baylor_103091, Mouse strain C57BL/6J (56 days, male) 1.5
1082 Antisense, RP_Baylor_103091, Mouse strain C57BL/6J (56 days, male) 1.0
1083 Sense, RPS_Baylor_37062, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.