MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:43.3 nTPM
HPA:43.3 nTPM
GTEx:43.7 nTPM
FANTOM5:21.4 Scaled Tags Per Million
Pig:12.6 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.1
2586 Male, age 75, left hemisphere 44.7
1870 Female, age 42, unknown 43.1
1830 Male, age 51, unknown 42.8
2828 Female, age 72, unknown 42.6
2219 Male, age 76, both hemispheres 42.0
2666 Male, age 74, left hemisphere 42.0
2411 Female, age 72, unknown 41.7
2019 Male, age 18, unknown 41.4
1833 Male, age 53, unknown 40.6
1827 Male, age 72, unknown 40.3
Dorsal raphe nucleus
nTPM: 40.2
2047 Male, age 72, unknown 41.1
2750 Male, age 76, both hemispheres 40.4
2016 Female, age 72, unknown 40.3
1828 Male, age 53, unknown 40.2
2298 Female, age 72, unknown 38.8
Inferior colliculus
nTPM: 40.1
2849 Male, age 72, unknown 42.0
1848 Female, age 42, unknown 40.4
1890 Male, age 53, unknown 40.1
2097 Female, age 72, unknown 37.9
Median raphe nucleus
nTPM: 37.1
2220 Male, age 76, midline 37.1
Pedunculopontine tegmental nucleus
nTPM: 40.3
2338 Male, age 61, both hemispheres 40.6
1921 Female, age 85, both hemispheres 40.5
2334 Male, age 80, both hemispheres 39.8
Periaquaductal grey, anterior
nTPM: 40.1
1947 Male, age 18, unknown 40.5
1795 Male, age 51, unknown 40.0
2502 Female, age 75, unknown 39.8
Periaquaductal grey, dorsal
nTPM: 39.4
2464 Female, age 72, unknown 40.7
1831 Male, age 72, unknown 40.3
1840 Male, age 53, unknown 38.3
2850 Male, age 76, both hemispheres 38.1
Periaquaductal grey, lateral
nTPM: 40.7
2053 Male, age 18, unknown 41.8
2272 Male, age 74, both hemispheres 40.6
2140 Male, age 76, both hemispheres 39.6
Pretectal area
nTPM: 39.1
2316 Male, age 76, right hemisphere 41.9
2407 Male, age 75, both hemispheres 40.5
2825 Male, age 18, unknown 40.2
1817 Female, age 42, unknown 39.5
2667 Female, age 75, unknown 39.5
2273 Male, age 74, both hemispheres 39.4
2007 Male, age 72, unknown 38.4
1815 Male, age 53, unknown 38.3
2224 Female, age 72, unknown 37.8
1944 Female, age 72, unknown 37.6
1816 Male, age 51, unknown 36.8
Red nucleus
nTPM: 43.3
1904 Male, age 53, unknown 46.7
2769 Male, age 72, unknown 46.1
2227 Male, age 72, unknown 45.3
1865 Male, age 51, unknown 44.4
2503 Female, age 72, unknown 43.8
1954 Female, age 42, unknown 42.9
2725 Female, age 75, unknown 42.4
2785 Male, age 18, unknown 41.9
2823 Male, age 76, right hemisphere 41.8
1821 Female, age 72, unknown 41.6
2584 Male, age 75, left hemisphere 41.4
2588 Male, age 74, left hemisphere 41.3
Substantia nigra
nTPM: 38.7
2583 Male, age 75, right hemisphere 41.6
2665 Male, age 74, both hemispheres 40.1
1851 Male, age 51, unknown 40.0
2590 Female, age 75, unknown 39.5
2699 Male, age 18, unknown 39.3
1889 Female, age 72, unknown 39.0
1941 Male, age 53, unknown 38.4
2409 Female, age 72, unknown 38.1
1916 Female, age 42, unknown 37.2
2241 Male, age 72, unknown 33.3
Superior colliculus
nTPM: 41.1
1913 Female, age 42, unknown 45.0
1995 Male, age 72, unknown 44.1
2664 Male, age 75, both hemispheres 42.4
1796 Male, age 53, unknown 40.9
1839 Male, age 51, unknown 40.8
1895 Male, age 76, right hemisphere 40.4
2668 Female, age 75, unknown 40.1
2087 Female, age 72, unknown 39.1
2587 Male, age 74, left hemisphere 39.0
2261 Male, age 18, unknown 38.9
Ventral tegmental area
nTPM: 40.0
2410 Female, age 72, unknown 41.8
2021 Male, age 53, unknown 40.5
2223 Female, age 72, unknown 40.3
1942 Male, age 51, unknown 39.6
1915 Female, age 42, unknown 39.2
2218 Male, age 76, both hemispheres 38.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 43.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.7
Samples: 139

Max nTPM: 87.5
Min nTPM: 20.7
Std nTPM: 11.1
Median nTPM: 43.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 87.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 82.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 75.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 72.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 69.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 67.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 63.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 62.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 59.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 59.1
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 56.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.4
FF:10158-103A5 76 years, female 21.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.6
Pig sample Sample description nTPM
Midbrain
nTPM: 12.6
Samples: 4

Max nTPM: 18.3
Min nTPM: 10.6
Sample A Female 18.3
Sample B Female 10.6
Sample C Male 11.0
Sample D Male 10.6
Periaqueductal gray
nTPM: 10.3
Samples: 3

Max nTPM: 11.2
Min nTPM: 9.4
Sample B Female 10.2
Sample C Male 11.2
Sample D Male 9.4
Substantia nigra
nTPM: 12.4
Samples: 4

Max nTPM: 14.7
Min nTPM: 11.3
Sample A Female 14.7
Sample B Female 11.3
Sample C Male 11.3
Sample D Male 12.4
Superior colliculi
nTPM: 11.1
Samples: 4

Max nTPM: 12.8
Min nTPM: 9.4
Sample A Female 12.8
Sample B Female 11.9
Sample C Male 9.4
Sample D Male 10.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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