BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:34.9 nTPM
HPA:34.9 nTPM
GTEx:38.7 nTPM
FANTOM5:59.7 Scaled Tags Per Million
Pig:20.6 nTPM
Mouse:1.6 nTPM
Allen mouse:0.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA068119
Glial cells Medium
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 34.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 28.0
2288 Male, age 75, left hemisphere 32.6
2290 Female, age 72, unknown 32.4
2846 Female, age 79, unknown 29.8
1781 Male, age 74, unknown 28.8
2289 Male, age 61, right hemisphere 26.5
1857 Female, age 85, left hemisphere 25.6
2481 Female, age 94, left hemisphere 25.5
1854 Male, age 80, left hemisphere 22.7
Claustrum
nTPM: 30.7
2292 Female, age 85, both hemispheres 33.6
2645 Female, age 72, unknown 33.3
2568 Male, age 61, both hemispheres 33.1
1956 Male, age 74, unknown 32.6
2284 Female, age 91, both hemispheres 32.3
2198 Male, age 80, both hemispheres 31.8
2196 Female, age 79, unknown 28.8
2491 Male, age 75, both hemispheres 27.7
2392 Female, age 94, both hemispheres 23.1
Globus pallidus, externus
nTPM: 34.7
2646 Male, age 61, right hemisphere 47.2
1996 Male, age 80, right hemisphere 34.1
2772 Female, age 79, unknown 33.9
2567 Female, age 72, unknown 32.5
2395 Male, age 75, both hemispheres 25.7
Globus pallidus, internus
nTPM: 34.9
2778 Female, age 91, both hemispheres 39.9
2111 Female, age 85, right hemisphere 39.5
2287 Male, age 75, right hemisphere 37.7
1818 Male, age 74, unknown 34.0
2566 Female, age 72, unknown 33.2
2037 Male, age 80, right hemisphere 30.3
2483 Female, age 94, right hemisphere 29.7
Nucleus accumbens
nTPM: 27.9
2698 Female, age 72, unknown 31.8
1783 Male, age 74, unknown 30.5
2286 Male, age 75, left hemisphere 29.6
2824 Male, age 61, right hemisphere 28.4
1806 Female, age 85, left hemisphere 27.7
2391 Female, age 94, left hemisphere 25.6
2732 Male, age 80, right hemisphere 25.3
1856 Female, age 91, right hemisphere 24.7
Nucleus basalis of Meynert
nTPM: 30.2
2569 Male, age 61, both hemispheres 44.9
2821 Male, age 75, both hemispheres 27.1
2484 Female, age 94, left hemisphere 25.8
2393 Male, age 80, right hemisphere 22.8
Nucleus of the diagonal band
nTPM: 27.5
2195 Female, age 85, both hemispheres 29.1
2775 Male, age 80, right hemisphere 28.2
2029 Male, age 61, right hemisphere 27.0
1812 Female, age 91, both hemispheres 26.7
1979 Male, age 74, unknown 26.3
Olfactory tubercle
nTPM: 27.0
2856 Male, age 75, right hemisphere 28.5
2487 Female, age 94, left hemisphere 27.3
1998 Female, age 91, both hemispheres 26.2
1846 Male, age 80, right hemisphere 26.0
Putamen
nTPM: 28.2
2647 Male, age 75, left hemisphere 35.3
1829 Male, age 74, unknown 30.8
2489 Female, age 72, unknown 30.0
1937 Female, age 91, right hemisphere 26.9
2466 Female, age 79, unknown 26.2
2482 Female, age 94, left hemisphere 25.1
1838 Male, age 80, right hemisphere 23.0
Septal nuclei
nTPM: 26.8
2629 Female, age 94, right hemisphere 29.6
2059 Female, age 85, both hemispheres 29.5
1960 Male, age 74, unknown 28.7
2031 Female, age 72, unknown 27.3
2394 Male, age 61, left hemisphere 26.3
2199 Male, age 80, right hemisphere 23.7
2009 Female, age 91, both hemispheres 22.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 38.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 35.2
Samples: 246

Max nTPM: 56.8
Min nTPM: 13.4
Std nTPM: 7.2
Median nTPM: 34.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 56.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 55.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 54.9
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 53.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 53.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 52.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 51.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 49.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 49.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 49.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 49.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 37.2
Samples: 246

Max nTPM: 67.5
Min nTPM: 10.9
Std nTPM: 8.7
Median nTPM: 36.7
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 67.5
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 65.5
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 62.9
GTEX-13JUV-0011-R6b-SM-5LZYG 40-49 years, female 57.6
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 57.0
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 55.7
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 54.7
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 53.8
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 53.3
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 53.2
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 53.0
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Brain - Putamen (basal ganglia)
Average nTPM: 38.7
Samples: 205

Max nTPM: 64.0
Min nTPM: 20.3
Std nTPM: 7.3
Median nTPM: 37.8
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 64.0
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 60.2
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 58.8
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 57.9
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 56.3
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 55.7
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 55.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 54.3
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 54.1
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 52.9
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 52.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 59.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 44.2
FF:10164-103B2 76 years, female 44.2
Globus pallidus
Scaled Tags Per Million: 43.8
FF:10161-103A8 76 years, female 45.8
FF:10175-103C4 60 years, female 41.8
Nucleus accumbens
Scaled Tags Per Million: 59.7
FF:10037-101F1 23-56 years, mixed 59.7
Putamen
Scaled Tags Per Million: 49.3
FF:10176-103C5 60 years, female 49.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 20.6
Pig sample Sample description nTPM
Caudate
nTPM: 17.2
Samples: 4

Max nTPM: 20.2
Min nTPM: 14.3
Sample A Female 14.3
Sample B Female 19.5
Sample C Male 20.2
Sample D Male 14.9
Putamen
nTPM: 20.6
Samples: 4

Max nTPM: 24.0
Min nTPM: 15.6
Sample A Female 22.9
Sample B Female 15.6
Sample C Male 19.9
Sample D Male 24.0
Septum
nTPM: 18.8
Samples: 4

Max nTPM: 20.1
Min nTPM: 17.3
Sample A Female 19.9
Sample B Female 17.7
Sample C Male 20.1
Sample D Male 17.3
Ventral pallidum
nTPM: 19.6
Samples: 4

Max nTPM: 24.7
Min nTPM: 14.3
Sample A Female 14.3
Sample B Female 19.2
Sample C Male 24.7
Sample D Male 20.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 1.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.6
Samples: 4

Max nTPM: 2.5
Min nTPM: 0.9
Sample A Male 2.5
Sample B Male 0.9
Sample C Female 0.9
Sample D Female 1.9
Septum
nTPM: 1.0
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.6
Sample A Male 1.1
Sample B Male 0.6
Sample C Female 1.1
Sample D Female 1.0
Ventral forebrain
nTPM: 1.4
Samples: 4

Max nTPM: 2.3
Min nTPM: 0.8
Sample A Male 2.3
Sample B Male 1.2
Sample C Female 0.8
Sample D Female 1.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
634454 Antisense, RP_040914_01_A04, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.1
634454 Antisense, RP_040914_01_A04, Mouse strain C57BL/6J (56 days, male) 0.1

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