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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:123.8 nTPM
HPA:123.8 nTPM
GTEx:87.6 nTPM
FANTOM5:111.3 Scaled Tags Per Million
Pig:59.1 nTPM
Mouse:73.8 nTPM
Allen mouse:0.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 123.8
Sample id Sample description nTPM
Amygdala
nTPM: 118.8
1987 Female, age 91, left hemisphere 127.3
2517 Female, age 94, left hemisphere 124.4
2514 Male, age 75, right hemisphere 118.4
2814 Male, age 76, right hemisphere 113.5
2695 Female, age 67, right hemisphere 110.2
Basal amygdala
nTPM: 115.6
2609 Male, age 75, right hemisphere 122.4
2685 Female, age 94, left hemisphere 118.9
1955 Male, age 76, both hemispheres 117.7
2110 Male, age 80, left hemisphere 116.7
2243 Female, age 91, right hemisphere 112.9
2827 Female, age 67, right hemisphere 104.8
Central amygdala
nTPM: 119.9
2826 Female, age 94, left hemisphere 124.9
2515 Male, age 75, right hemisphere 123.0
2239 Male, age 80, left hemisphere 119.1
1905 Male, age 76, both hemispheres 118.9
2701 Female, age 91, right hemisphere 113.8
Corticomedial amygdala
nTPM: 113.2
2428 Male, age 75, right hemisphere 117.2
2535 Female, age 67, right hemisphere 115.3
2829 Male, age 80, left hemisphere 115.0
2242 Female, age 91, right hemisphere 114.2
2429 Female, age 94, left hemisphere 114.1
2240 Male, age 76, both hemispheres 103.5
Lateral amygdala
nTPM: 117.6
2534 Female, age 94, left hemisphere 128.7
2256 Male, age 80, left hemisphere 120.7
2516 Male, age 75, right hemisphere 119.7
2255 Female, age 91, right hemisphere 119.1
1883 Male, age 76, both hemispheres 118.1
2830 Female, age 67, right hemisphere 99.3
Stria terminalis, bed nucleus
nTPM: 123.8
1974 Female, age 91, both hemispheres 128.7
2201 Male, age 74, unknown 123.1
2486 Female, age 94, both hemispheres 119.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 87.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 87.6
Samples: 152

Max nTPM: 163.0
Min nTPM: 34.6
Std nTPM: 21.9
Median nTPM: 86.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 163.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 162.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 159.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 143.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 138.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 134.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 126.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 124.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 122.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 122.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 120.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 118.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 117.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 117.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 116.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 114.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 114.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 114.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 112.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 111.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 111.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 109.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 107.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 106.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 105.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 105.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 105.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 103.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 102.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 101.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 101.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 101.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 101.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 101.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 100.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 100.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 98.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 98.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 98.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 97.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 97.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 96.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 96.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 96.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 95.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 95.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 95.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 95.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 95.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 95.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 94.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 94.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 94.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 93.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 93.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 93.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 92.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 91.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 91.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 90.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 89.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 89.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 88.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 88.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 88.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 87.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 87.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 87.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 87.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 87.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 87.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 87.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 87.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 86.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 86.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 86.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 85.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 85.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 85.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 85.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 84.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 84.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 83.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 83.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 83.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 83.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 83.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 81.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 81.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 80.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 80.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 80.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 80.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 80.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 79.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 79.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 79.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 78.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 78.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 77.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 76.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 76.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 76.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 76.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 76.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 76.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 75.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 75.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 75.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 75.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 75.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 74.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 74.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 73.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 72.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 72.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 72.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 72.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 71.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 71.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 70.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 69.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 69.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 68.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 68.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 67.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 66.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 66.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 66.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 66.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 65.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 64.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 64.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 64.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 64.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 63.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 63.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 63.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 62.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 62.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 62.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 61.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 61.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 59.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 57.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 52.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 52.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 52.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 51.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 46.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 36.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 34.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 111.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 111.3
FF:10151-102I7 76 years, female 111.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 59.1
Pig sample Sample description nTPM
Amygdala
nTPM: 59.1
Samples: 4

Max nTPM: 80.5
Min nTPM: 46.5
Sample A Female 80.5
Sample B Female 46.5
Sample C Male 51.9
Sample D Male 57.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 73.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 73.8
Samples: 4

Max nTPM: 80.6
Min nTPM: 71.2
Sample A Male 80.6
Sample B Male 71.2
Sample C Female 71.7
Sample D Female 71.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.3
74581086 Antisense, RP_060215_02_E06, Mouse strain C57BL/6J (56 days, male) 0.3

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