MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:126.5 nTPM
HPA:126.5 nTPM
GTEx:80.8 nTPM
FANTOM5:135.1 Scaled Tags Per Million
Pig:74.7 nTPM
Mouse:46.0 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 126.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 116.5
2586 Male, age 75, left hemisphere 126.5
2411 Female, age 72, unknown 122.5
2828 Female, age 72, unknown 122.3
1870 Female, age 42, unknown 121.6
2219 Male, age 76, both hemispheres 115.5
1827 Male, age 72, unknown 114.4
1833 Male, age 53, unknown 113.1
2019 Male, age 18, unknown 112.5
1830 Male, age 51, unknown 111.8
2666 Male, age 74, left hemisphere 104.4
Dorsal raphe nucleus
nTPM: 123.2
2750 Male, age 76, both hemispheres 130.7
2298 Female, age 72, unknown 127.7
2047 Male, age 72, unknown 125.6
2016 Female, age 72, unknown 119.0
1828 Male, age 53, unknown 112.9
Inferior colliculus
nTPM: 115.5
2097 Female, age 72, unknown 121.8
1890 Male, age 53, unknown 115.4
1848 Female, age 42, unknown 113.3
2849 Male, age 72, unknown 111.8
Median raphe nucleus
nTPM: 121.2
2220 Male, age 76, midline 121.2
Pedunculopontine tegmental nucleus
nTPM: 113.4
1921 Female, age 85, both hemispheres 120.7
2334 Male, age 80, both hemispheres 115.2
2338 Male, age 61, both hemispheres 104.3
Periaquaductal grey, anterior
nTPM: 126.5
1947 Male, age 18, unknown 128.6
1795 Male, age 51, unknown 126.5
2502 Female, age 75, unknown 124.3
Periaquaductal grey, dorsal
nTPM: 112.6
1840 Male, age 53, unknown 117.3
2850 Male, age 76, both hemispheres 111.9
2464 Female, age 72, unknown 111.7
1831 Male, age 72, unknown 109.7
Periaquaductal grey, lateral
nTPM: 123.7
2272 Male, age 74, both hemispheres 131.5
2140 Male, age 76, both hemispheres 123.2
2053 Male, age 18, unknown 116.3
Pretectal area
nTPM: 118.8
2273 Male, age 74, both hemispheres 134.6
2224 Female, age 72, unknown 124.0
2667 Female, age 75, unknown 121.4
2825 Male, age 18, unknown 119.5
2316 Male, age 76, right hemisphere 119.4
2007 Male, age 72, unknown 118.7
1944 Female, age 72, unknown 115.3
1816 Male, age 51, unknown 114.6
2407 Male, age 75, both hemispheres 114.4
1817 Female, age 42, unknown 113.3
1815 Male, age 53, unknown 112.0
Red nucleus
nTPM: 114.7
2227 Male, age 72, unknown 122.5
2503 Female, age 72, unknown 121.4
2769 Male, age 72, unknown 121.0
2785 Male, age 18, unknown 119.6
1904 Male, age 53, unknown 117.2
2588 Male, age 74, left hemisphere 114.3
1954 Female, age 42, unknown 113.3
2584 Male, age 75, left hemisphere 111.5
2725 Female, age 75, unknown 110.2
1865 Male, age 51, unknown 109.3
1821 Female, age 72, unknown 108.4
2823 Male, age 76, right hemisphere 107.5
Substantia nigra
nTPM: 114.2
1916 Female, age 42, unknown 125.4
1851 Male, age 51, unknown 124.4
1941 Male, age 53, unknown 119.5
1889 Female, age 72, unknown 116.0
2590 Female, age 75, unknown 114.7
2583 Male, age 75, right hemisphere 114.3
2241 Male, age 72, unknown 110.7
2699 Male, age 18, unknown 110.1
2665 Male, age 74, both hemispheres 105.7
2409 Female, age 72, unknown 101.6
Superior colliculus
nTPM: 115.7
1796 Male, age 53, unknown 124.9
2261 Male, age 18, unknown 122.1
2587 Male, age 74, left hemisphere 118.5
2668 Female, age 75, unknown 118.1
1913 Female, age 42, unknown 117.2
1839 Male, age 51, unknown 114.4
1895 Male, age 76, right hemisphere 111.6
2664 Male, age 75, both hemispheres 111.6
1995 Male, age 72, unknown 111.1
2087 Female, age 72, unknown 107.8
Ventral tegmental area
nTPM: 121.6
1942 Male, age 51, unknown 127.1
1915 Female, age 42, unknown 124.3
2410 Female, age 72, unknown 122.0
2218 Male, age 76, both hemispheres 120.4
2021 Male, age 53, unknown 118.4
2223 Female, age 72, unknown 117.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 80.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 80.8
Samples: 139

Max nTPM: 154.6
Min nTPM: 42.5
Std nTPM: 20.5
Median nTPM: 77.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 154.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 144.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 140.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 138.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 130.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 126.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 125.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 124.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 116.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 111.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 109.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 135.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 135.1
FF:10158-103A5 76 years, female 135.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 74.7
Pig sample Sample description nTPM
Midbrain
nTPM: 74.8
Samples: 4

Max nTPM: 93.0
Min nTPM: 60.1
Sample A Female 93.0
Sample B Female 60.1
Sample C Male 73.4
Sample D Male 72.5
Periaqueductal gray
nTPM: 59.8
Samples: 3

Max nTPM: 67.8
Min nTPM: 55.4
Sample B Female 55.4
Sample C Male 67.8
Sample D Male 56.1
Substantia nigra
nTPM: 64.9
Samples: 4

Max nTPM: 80.0
Min nTPM: 51.8
Sample A Female 80.0
Sample B Female 51.8
Sample C Male 73.4
Sample D Male 54.4
Superior colliculi
nTPM: 73.4
Samples: 4

Max nTPM: 82.4
Min nTPM: 64.5
Sample A Female 82.4
Sample B Female 76.6
Sample C Male 64.5
Sample D Male 69.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 46.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.0
Samples: 4

Max nTPM: 52.4
Min nTPM: 40.9
Sample A Male 52.4
Sample B Male 41.2
Sample C Female 40.9
Sample D Female 49.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
74581086 Antisense, RP_060215_02_E06, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.