MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:26.0 nTPM
HPA:26.0 nTPM
GTEx:18.9 nTPM
FANTOM5:46.1 Scaled Tags Per Million
Pig:32.3 nTPM
Mouse:25.9 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.0
2586 Male, age 75, left hemisphere 35.5
2219 Male, age 76, both hemispheres 30.6
2828 Female, age 72, unknown 29.4
1833 Male, age 53, unknown 25.9
2666 Male, age 74, left hemisphere 25.6
1830 Male, age 51, unknown 24.6
1827 Male, age 72, unknown 23.4
2019 Male, age 18, unknown 22.8
1870 Female, age 42, unknown 21.4
2411 Female, age 72, unknown 20.9
Dorsal raphe nucleus
nTPM: 20.7
2750 Male, age 76, both hemispheres 23.0
2047 Male, age 72, unknown 22.4
1828 Male, age 53, unknown 21.6
2016 Female, age 72, unknown 20.9
2298 Female, age 72, unknown 15.9
Inferior colliculus
nTPM: 21.0
2849 Male, age 72, unknown 25.5
1890 Male, age 53, unknown 21.3
1848 Female, age 42, unknown 20.2
2097 Female, age 72, unknown 17.0
Median raphe nucleus
nTPM: 19.3
2220 Male, age 76, midline 19.3
Pedunculopontine tegmental nucleus
nTPM: 22.8
2338 Male, age 61, both hemispheres 24.4
1921 Female, age 85, both hemispheres 24.2
2334 Male, age 80, both hemispheres 19.9
Periaquaductal grey, anterior
nTPM: 25.1
1795 Male, age 51, unknown 26.5
1947 Male, age 18, unknown 25.0
2502 Female, age 75, unknown 23.8
Periaquaductal grey, dorsal
nTPM: 22.8
2464 Female, age 72, unknown 24.6
1831 Male, age 72, unknown 24.0
2850 Male, age 76, both hemispheres 23.9
1840 Male, age 53, unknown 18.9
Periaquaductal grey, lateral
nTPM: 25.5
2140 Male, age 76, both hemispheres 28.5
2053 Male, age 18, unknown 26.8
2272 Male, age 74, both hemispheres 21.2
Pretectal area
nTPM: 25.1
2407 Male, age 75, both hemispheres 37.5
2316 Male, age 76, right hemisphere 32.7
2667 Female, age 75, unknown 31.4
2825 Male, age 18, unknown 26.8
2273 Male, age 74, both hemispheres 24.5
1815 Male, age 53, unknown 22.6
2224 Female, age 72, unknown 20.5
2007 Male, age 72, unknown 20.2
1816 Male, age 51, unknown 20.0
1944 Female, age 72, unknown 19.9
1817 Female, age 42, unknown 19.8
Red nucleus
nTPM: 24.1
2823 Male, age 76, right hemisphere 33.6
2584 Male, age 75, left hemisphere 28.9
2227 Male, age 72, unknown 27.1
2588 Male, age 74, left hemisphere 26.2
1904 Male, age 53, unknown 25.6
1865 Male, age 51, unknown 25.1
2769 Male, age 72, unknown 24.7
2785 Male, age 18, unknown 23.4
1954 Female, age 42, unknown 19.9
2503 Female, age 72, unknown 19.7
2725 Female, age 75, unknown 19.4
1821 Female, age 72, unknown 15.7
Substantia nigra
nTPM: 19.7
2409 Female, age 72, unknown 24.6
2583 Male, age 75, right hemisphere 23.5
2665 Male, age 74, both hemispheres 23.3
2699 Male, age 18, unknown 23.0
1941 Male, age 53, unknown 19.1
2590 Female, age 75, unknown 19.1
1889 Female, age 72, unknown 18.9
1851 Male, age 51, unknown 17.6
2241 Male, age 72, unknown 16.6
1916 Female, age 42, unknown 11.6
Superior colliculus
nTPM: 26.0
2664 Male, age 75, both hemispheres 38.7
1839 Male, age 51, unknown 27.6
1913 Female, age 42, unknown 26.5
1895 Male, age 76, right hemisphere 26.2
2668 Female, age 75, unknown 26.0
1796 Male, age 53, unknown 25.3
1995 Male, age 72, unknown 24.1
2087 Female, age 72, unknown 23.8
2261 Male, age 18, unknown 21.7
2587 Male, age 74, left hemisphere 19.8
Ventral tegmental area
nTPM: 19.2
1942 Male, age 51, unknown 22.4
2021 Male, age 53, unknown 22.3
2218 Male, age 76, both hemispheres 20.0
2223 Female, age 72, unknown 18.9
1915 Female, age 42, unknown 16.0
2410 Female, age 72, unknown 15.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.9
Samples: 139

Max nTPM: 30.6
Min nTPM: 9.3
Std nTPM: 4.2
Median nTPM: 18.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 30.6
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 30.2
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 30.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 29.6
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 28.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 27.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 26.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 26.0
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 25.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 25.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 25.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 46.1
FF:10158-103A5 76 years, female 46.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 32.3
Pig sample Sample description nTPM
Midbrain
nTPM: 30.3
Samples: 4

Max nTPM: 38.9
Min nTPM: 25.6
Sample A Female 38.9
Sample B Female 29.2
Sample C Male 27.3
Sample D Male 25.6
Periaqueductal gray
nTPM: 28.4
Samples: 3

Max nTPM: 28.5
Min nTPM: 28.1
Sample B Female 28.1
Sample C Male 28.5
Sample D Male 28.5
Substantia nigra
nTPM: 30.0
Samples: 4

Max nTPM: 31.9
Min nTPM: 27.0
Sample A Female 27.0
Sample B Female 31.4
Sample C Male 29.8
Sample D Male 31.9
Superior colliculi
nTPM: 32.3
Samples: 4

Max nTPM: 41.0
Min nTPM: 27.1
Sample A Female 31.4
Sample B Female 41.0
Sample C Male 27.1
Sample D Male 29.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.9
Samples: 4

Max nTPM: 28.3
Min nTPM: 24.2
Sample A Male 28.3
Sample B Male 24.6
Sample C Female 26.5
Sample D Female 24.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
70528216 Antisense, RP_050623_02_B02, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.