MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:56.3 nTPM
HPA:56.3 nTPM
GTEx:52.1 nTPM
FANTOM5:114.2 Scaled Tags Per Million
Pig:79.4 nTPM
Mouse:33.8 nTPM
Allen mouse:4.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.8
2828 Female, age 72, unknown 58.5
1830 Male, age 51, unknown 57.0
2586 Male, age 75, left hemisphere 56.8
1833 Male, age 53, unknown 56.2
2666 Male, age 74, left hemisphere 56.1
1870 Female, age 42, unknown 54.8
1827 Male, age 72, unknown 53.8
2219 Male, age 76, both hemispheres 53.1
2019 Male, age 18, unknown 51.6
2411 Female, age 72, unknown 49.9
Dorsal raphe nucleus
nTPM: 49.5
2016 Female, age 72, unknown 54.5
2750 Male, age 76, both hemispheres 52.1
1828 Male, age 53, unknown 49.9
2047 Male, age 72, unknown 46.3
2298 Female, age 72, unknown 44.7
Inferior colliculus
nTPM: 51.1
2849 Male, age 72, unknown 57.1
1848 Female, age 42, unknown 51.2
1890 Male, age 53, unknown 50.8
2097 Female, age 72, unknown 45.3
Median raphe nucleus
nTPM: 47.6
2220 Male, age 76, midline 47.6
Pedunculopontine tegmental nucleus
nTPM: 51.7
2338 Male, age 61, both hemispheres 52.8
2334 Male, age 80, both hemispheres 52.4
1921 Female, age 85, both hemispheres 50.0
Periaquaductal grey, anterior
nTPM: 50.8
1947 Male, age 18, unknown 51.8
1795 Male, age 51, unknown 51.1
2502 Female, age 75, unknown 49.6
Periaquaductal grey, dorsal
nTPM: 51.4
2850 Male, age 76, both hemispheres 55.8
1831 Male, age 72, unknown 51.2
2464 Female, age 72, unknown 49.7
1840 Male, age 53, unknown 49.0
Periaquaductal grey, lateral
nTPM: 51.7
2140 Male, age 76, both hemispheres 52.6
2053 Male, age 18, unknown 51.4
2272 Male, age 74, both hemispheres 51.0
Pretectal area
nTPM: 53.0
2407 Male, age 75, both hemispheres 56.9
2667 Female, age 75, unknown 56.9
1815 Male, age 53, unknown 56.7
2825 Male, age 18, unknown 53.8
1817 Female, age 42, unknown 53.7
2316 Male, age 76, right hemisphere 53.7
2273 Male, age 74, both hemispheres 52.3
1944 Female, age 72, unknown 50.6
1816 Male, age 51, unknown 50.0
2224 Female, age 72, unknown 49.6
2007 Male, age 72, unknown 48.2
Red nucleus
nTPM: 55.6
1904 Male, age 53, unknown 58.2
1821 Female, age 72, unknown 58.0
2503 Female, age 72, unknown 57.3
2227 Male, age 72, unknown 56.7
2823 Male, age 76, right hemisphere 56.6
1954 Female, age 42, unknown 56.3
1865 Male, age 51, unknown 55.8
2769 Male, age 72, unknown 55.8
2785 Male, age 18, unknown 54.1
2725 Female, age 75, unknown 53.3
2588 Male, age 74, left hemisphere 52.9
2584 Male, age 75, left hemisphere 51.8
Substantia nigra
nTPM: 52.2
2665 Male, age 74, both hemispheres 61.1
2699 Male, age 18, unknown 59.8
1916 Female, age 42, unknown 53.4
1851 Male, age 51, unknown 53.1
2590 Female, age 75, unknown 50.7
2583 Male, age 75, right hemisphere 50.5
1889 Female, age 72, unknown 49.9
2241 Male, age 72, unknown 48.7
1941 Male, age 53, unknown 48.0
2409 Female, age 72, unknown 46.8
Superior colliculus
nTPM: 56.3
1995 Male, age 72, unknown 62.3
1913 Female, age 42, unknown 61.8
2664 Male, age 75, both hemispheres 58.4
1839 Male, age 51, unknown 57.7
1895 Male, age 76, right hemisphere 57.6
2668 Female, age 75, unknown 57.0
2587 Male, age 74, left hemisphere 56.1
1796 Male, age 53, unknown 52.0
2261 Male, age 18, unknown 51.4
2087 Female, age 72, unknown 48.7
Ventral tegmental area
nTPM: 51.1
2410 Female, age 72, unknown 53.9
2021 Male, age 53, unknown 53.7
2218 Male, age 76, both hemispheres 51.3
2223 Female, age 72, unknown 50.5
1942 Male, age 51, unknown 48.9
1915 Female, age 42, unknown 48.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 52.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 52.1
Samples: 139

Max nTPM: 81.3
Min nTPM: 27.6
Std nTPM: 10.9
Median nTPM: 51.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 81.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 78.8
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 75.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 74.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 73.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 73.2
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 72.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 71.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 71.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 68.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 68.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 114.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 114.2
FF:10158-103A5 76 years, female 114.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 79.4
Pig sample Sample description nTPM
Midbrain
nTPM: 79.4
Samples: 4

Max nTPM: 117.6
Min nTPM: 63.4
Sample A Female 117.6
Sample B Female 70.9
Sample C Male 63.4
Sample D Male 65.8
Periaqueductal gray
nTPM: 68.3
Samples: 3

Max nTPM: 71.9
Min nTPM: 65.6
Sample B Female 67.4
Sample C Male 71.9
Sample D Male 65.6
Substantia nigra
nTPM: 74.4
Samples: 4

Max nTPM: 85.1
Min nTPM: 68.9
Sample A Female 71.7
Sample B Female 71.7
Sample C Male 68.9
Sample D Male 85.1
Superior colliculi
nTPM: 75.0
Samples: 4

Max nTPM: 80.0
Min nTPM: 68.3
Sample A Female 78.0
Sample B Female 73.7
Sample C Male 68.3
Sample D Male 80.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 33.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.9
Samples: 4

Max nTPM: 35.2
Min nTPM: 32.6
Sample A Male 34.9
Sample B Male 32.7
Sample C Female 35.2
Sample D Female 32.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.5
68410458 Antisense, RP_041214_01_H11, Mouse strain C57BL/6J (56 days, male) 4.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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