MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:103.5 nTPM
HPA:103.5 nTPM
GTEx:153.9 nTPM
FANTOM5:29.5 Scaled Tags Per Million
Pig:31.8 nTPM
Mouse:5.4 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 103.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 101.7
2586 Male, age 75, left hemisphere 118.5
2666 Male, age 74, left hemisphere 113.0
2828 Female, age 72, unknown 107.4
1870 Female, age 42, unknown 104.4
1830 Male, age 51, unknown 98.0
1827 Male, age 72, unknown 96.7
1833 Male, age 53, unknown 96.5
2411 Female, age 72, unknown 95.4
2019 Male, age 18, unknown 94.7
2219 Male, age 76, both hemispheres 92.6
Dorsal raphe nucleus
nTPM: 96.4
2016 Female, age 72, unknown 100.1
1828 Male, age 53, unknown 97.1
2047 Male, age 72, unknown 96.3
2298 Female, age 72, unknown 94.4
2750 Male, age 76, both hemispheres 94.1
Inferior colliculus
nTPM: 99.2
2849 Male, age 72, unknown 102.7
1890 Male, age 53, unknown 99.9
2097 Female, age 72, unknown 97.5
1848 Female, age 42, unknown 96.5
Median raphe nucleus
nTPM: 96.5
2220 Male, age 76, midline 96.5
Pedunculopontine tegmental nucleus
nTPM: 95.5
2338 Male, age 61, both hemispheres 100.2
2334 Male, age 80, both hemispheres 96.0
1921 Female, age 85, both hemispheres 90.4
Periaquaductal grey, anterior
nTPM: 98.5
2502 Female, age 75, unknown 103.8
1795 Male, age 51, unknown 97.5
1947 Male, age 18, unknown 94.1
Periaquaductal grey, dorsal
nTPM: 93.5
1840 Male, age 53, unknown 95.7
1831 Male, age 72, unknown 95.5
2850 Male, age 76, both hemispheres 92.3
2464 Female, age 72, unknown 90.4
Periaquaductal grey, lateral
nTPM: 91.8
2053 Male, age 18, unknown 94.8
2140 Male, age 76, both hemispheres 92.0
2272 Male, age 74, both hemispheres 88.6
Pretectal area
nTPM: 93.3
2407 Male, age 75, both hemispheres 103.3
2825 Male, age 18, unknown 97.0
2316 Male, age 76, right hemisphere 95.9
2007 Male, age 72, unknown 93.7
2667 Female, age 75, unknown 93.3
1815 Male, age 53, unknown 92.1
1817 Female, age 42, unknown 91.7
1816 Male, age 51, unknown 90.9
2224 Female, age 72, unknown 90.8
2273 Male, age 74, both hemispheres 89.4
1944 Female, age 72, unknown 87.9
Red nucleus
nTPM: 103.5
2584 Male, age 75, left hemisphere 116.3
2503 Female, age 72, unknown 111.9
2227 Male, age 72, unknown 109.8
2769 Male, age 72, unknown 108.3
1865 Male, age 51, unknown 104.6
1904 Male, age 53, unknown 103.0
2725 Female, age 75, unknown 100.9
2785 Male, age 18, unknown 99.8
1821 Female, age 72, unknown 98.8
2588 Male, age 74, left hemisphere 97.9
1954 Female, age 42, unknown 96.8
2823 Male, age 76, right hemisphere 93.8
Substantia nigra
nTPM: 96.0
2665 Male, age 74, both hemispheres 107.0
2699 Male, age 18, unknown 105.2
2583 Male, age 75, right hemisphere 101.2
1851 Male, age 51, unknown 98.8
1916 Female, age 42, unknown 95.6
1941 Male, age 53, unknown 95.1
2590 Female, age 75, unknown 94.7
1889 Female, age 72, unknown 91.1
2409 Female, age 72, unknown 86.4
2241 Male, age 72, unknown 84.6
Superior colliculus
nTPM: 99.3
2664 Male, age 75, both hemispheres 121.1
1913 Female, age 42, unknown 102.0
1995 Male, age 72, unknown 100.5
2587 Male, age 74, left hemisphere 99.6
1796 Male, age 53, unknown 99.3
1839 Male, age 51, unknown 97.2
2668 Female, age 75, unknown 95.6
2261 Male, age 18, unknown 94.8
2087 Female, age 72, unknown 93.0
1895 Male, age 76, right hemisphere 90.0
Ventral tegmental area
nTPM: 97.2
1915 Female, age 42, unknown 101.8
2223 Female, age 72, unknown 101.5
1942 Male, age 51, unknown 99.4
2021 Male, age 53, unknown 97.6
2218 Male, age 76, both hemispheres 92.7
2410 Female, age 72, unknown 90.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 153.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 153.9
Samples: 139

Max nTPM: 422.6
Min nTPM: 44.9
Std nTPM: 53.7
Median nTPM: 150.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 422.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 320.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 295.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 265.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 258.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 257.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 246.1
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 238.7
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 233.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 233.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 230.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.5
FF:10158-103A5 76 years, female 29.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 31.8
Pig sample Sample description nTPM
Midbrain
nTPM: 30.6
Samples: 4

Max nTPM: 45.1
Min nTPM: 23.4
Sample A Female 45.1
Sample B Female 27.6
Sample C Male 23.4
Sample D Male 26.2
Periaqueductal gray
nTPM: 23.6
Samples: 3

Max nTPM: 25.4
Min nTPM: 20.8
Sample B Female 25.4
Sample C Male 24.7
Sample D Male 20.8
Substantia nigra
nTPM: 29.0
Samples: 4

Max nTPM: 34.0
Min nTPM: 24.3
Sample A Female 34.0
Sample B Female 30.0
Sample C Male 24.3
Sample D Male 27.7
Superior colliculi
nTPM: 31.9
Samples: 4

Max nTPM: 36.5
Min nTPM: 25.5
Sample A Female 36.5
Sample B Female 35.6
Sample C Male 25.5
Sample D Male 29.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 5.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.4
Samples: 4

Max nTPM: 5.5
Min nTPM: 5.4
Sample A Male 5.4
Sample B Male 5.5
Sample C Female 5.4
Sample D Female 5.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
68193067 Antisense, RP_040914_01_D05, Mouse strain C57BL/6J (56 days, male) 1.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.