MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:135.4 nTPM
HPA:135.4 nTPM
GTEx:230.7 nTPM
FANTOM5:95.3 Scaled Tags Per Million
Pig:159.8 nTPM
Mouse:105.5 nTPM
Allen mouse:10.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 135.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 123.6
2411 Female, age 72, unknown 134.1
2586 Male, age 75, left hemisphere 133.0
2019 Male, age 18, unknown 131.5
1827 Male, age 72, unknown 131.3
2666 Male, age 74, left hemisphere 128.7
2828 Female, age 72, unknown 126.9
1870 Female, age 42, unknown 116.2
2219 Male, age 76, both hemispheres 112.8
1833 Male, age 53, unknown 111.1
1830 Male, age 51, unknown 110.7
Dorsal raphe nucleus
nTPM: 128.6
2298 Female, age 72, unknown 153.2
2047 Male, age 72, unknown 132.8
2750 Male, age 76, both hemispheres 128.4
1828 Male, age 53, unknown 122.5
2016 Female, age 72, unknown 105.9
Inferior colliculus
nTPM: 111.1
2097 Female, age 72, unknown 122.5
1890 Male, age 53, unknown 111.5
1848 Female, age 42, unknown 109.6
2849 Male, age 72, unknown 101.0
Median raphe nucleus
nTPM: 135.4
2220 Male, age 76, midline 135.4
Pedunculopontine tegmental nucleus
nTPM: 120.4
2334 Male, age 80, both hemispheres 132.5
1921 Female, age 85, both hemispheres 120.8
2338 Male, age 61, both hemispheres 107.8
Periaquaductal grey, anterior
nTPM: 127.8
1795 Male, age 51, unknown 138.8
2502 Female, age 75, unknown 123.1
1947 Male, age 18, unknown 121.7
Periaquaductal grey, dorsal
nTPM: 104.8
1831 Male, age 72, unknown 110.5
1840 Male, age 53, unknown 108.9
2464 Female, age 72, unknown 104.8
2850 Male, age 76, both hemispheres 95.1
Periaquaductal grey, lateral
nTPM: 107.8
2053 Male, age 18, unknown 115.1
2272 Male, age 74, both hemispheres 111.6
2140 Male, age 76, both hemispheres 96.7
Pretectal area
nTPM: 131.7
1816 Male, age 51, unknown 160.7
1944 Female, age 72, unknown 157.1
2007 Male, age 72, unknown 157.0
1817 Female, age 42, unknown 146.6
1815 Male, age 53, unknown 133.6
2224 Female, age 72, unknown 125.7
2667 Female, age 75, unknown 123.6
2273 Male, age 74, both hemispheres 120.6
2825 Male, age 18, unknown 112.2
2316 Male, age 76, right hemisphere 106.3
2407 Male, age 75, both hemispheres 105.5
Red nucleus
nTPM: 118.6
2785 Male, age 18, unknown 130.1
2503 Female, age 72, unknown 128.4
1821 Female, age 72, unknown 127.4
2584 Male, age 75, left hemisphere 117.9
2227 Male, age 72, unknown 117.0
2588 Male, age 74, left hemisphere 117.0
2769 Male, age 72, unknown 116.9
1954 Female, age 42, unknown 116.7
2725 Female, age 75, unknown 115.7
1904 Male, age 53, unknown 115.5
1865 Male, age 51, unknown 111.4
2823 Male, age 76, right hemisphere 109.4
Substantia nigra
nTPM: 127.3
1916 Female, age 42, unknown 154.5
1851 Male, age 51, unknown 140.0
1889 Female, age 72, unknown 139.0
1941 Male, age 53, unknown 139.0
2665 Male, age 74, both hemispheres 128.6
2583 Male, age 75, right hemisphere 125.2
2590 Female, age 75, unknown 119.5
2699 Male, age 18, unknown 110.6
2241 Male, age 72, unknown 108.7
2409 Female, age 72, unknown 107.8
Superior colliculus
nTPM: 124.4
2668 Female, age 75, unknown 145.2
2087 Female, age 72, unknown 139.3
2261 Male, age 18, unknown 134.9
1796 Male, age 53, unknown 130.5
1913 Female, age 42, unknown 124.9
2587 Male, age 74, left hemisphere 122.0
1995 Male, age 72, unknown 115.8
2664 Male, age 75, both hemispheres 115.1
1895 Male, age 76, right hemisphere 108.6
1839 Male, age 51, unknown 107.5
Ventral tegmental area
nTPM: 126.6
2410 Female, age 72, unknown 145.2
1915 Female, age 42, unknown 138.5
2218 Male, age 76, both hemispheres 124.7
1942 Male, age 51, unknown 118.2
2021 Male, age 53, unknown 117.6
2223 Female, age 72, unknown 115.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 230.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 230.7
Samples: 139

Max nTPM: 430.6
Min nTPM: 88.2
Std nTPM: 54.6
Median nTPM: 223.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 430.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 413.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 385.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 341.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 340.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 333.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 326.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 324.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 323.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 320.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 319.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 95.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 95.3
FF:10158-103A5 76 years, female 95.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 159.8
Pig sample Sample description nTPM
Midbrain
nTPM: 154.9
Samples: 4

Max nTPM: 210.6
Min nTPM: 125.8
Sample A Female 210.6
Sample B Female 150.0
Sample C Male 133.3
Sample D Male 125.8
Periaqueductal gray
nTPM: 130.4
Samples: 3

Max nTPM: 155.2
Min nTPM: 116.2
Sample B Female 119.9
Sample C Male 155.2
Sample D Male 116.2
Substantia nigra
nTPM: 158.8
Samples: 4

Max nTPM: 216.1
Min nTPM: 106.9
Sample A Female 216.1
Sample B Female 144.4
Sample C Male 167.6
Sample D Male 106.9
Superior colliculi
nTPM: 159.8
Samples: 4

Max nTPM: 202.5
Min nTPM: 123.9
Sample A Female 202.5
Sample B Female 167.5
Sample C Male 145.4
Sample D Male 123.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 105.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 105.5
Samples: 4

Max nTPM: 120.5
Min nTPM: 92.3
Sample A Male 120.5
Sample B Male 100.8
Sample C Female 92.3
Sample D Female 108.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.7
75750398 Antisense, RP_060518_04_G08, Mouse strain C57BL/6J (56 days, male) 10.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.