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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:68.8 nTPM
HPA:68.8 nTPM
GTEx:115.9 nTPM
FANTOM5:10.0 Scaled Tags Per Million
Pig:23.4 nTPM
Mouse:20.8 nTPM
Allen mouse:3.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 68.8
Sample id Sample description nTPM
Amygdala
nTPM: 31.4
2517 Female, age 94, left hemisphere 45.0
1987 Female, age 91, left hemisphere 43.9
2514 Male, age 75, right hemisphere 32.6
2695 Female, age 67, right hemisphere 18.7
2814 Male, age 76, right hemisphere 16.9
Basal amygdala
nTPM: 68.8
2243 Female, age 91, right hemisphere 100.9
2685 Female, age 94, left hemisphere 81.5
2110 Male, age 80, left hemisphere 73.4
2827 Female, age 67, right hemisphere 72.0
2609 Male, age 75, right hemisphere 44.4
1955 Male, age 76, both hemispheres 40.6
Central amygdala
nTPM: 44.4
2239 Male, age 80, left hemisphere 71.1
2826 Female, age 94, left hemisphere 56.7
2701 Female, age 91, right hemisphere 42.9
2515 Male, age 75, right hemisphere 34.0
1905 Male, age 76, both hemispheres 17.3
Corticomedial amygdala
nTPM: 67.7
2535 Female, age 67, right hemisphere 95.7
2829 Male, age 80, left hemisphere 86.5
2242 Female, age 91, right hemisphere 80.6
2429 Female, age 94, left hemisphere 65.7
2428 Male, age 75, right hemisphere 40.5
2240 Male, age 76, both hemispheres 37.3
Lateral amygdala
nTPM: 50.8
2256 Male, age 80, left hemisphere 78.4
2534 Female, age 94, left hemisphere 64.9
2255 Female, age 91, right hemisphere 61.6
2830 Female, age 67, right hemisphere 39.9
2516 Male, age 75, right hemisphere 30.4
1883 Male, age 76, both hemispheres 29.5
Stria terminalis, bed nucleus
nTPM: 53.4
1974 Female, age 91, both hemispheres 61.5
2486 Female, age 94, both hemispheres 60.0
2201 Male, age 74, unknown 38.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 115.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 115.9
Samples: 152

Max nTPM: 328.9
Min nTPM: 8.0
Std nTPM: 51.1
Median nTPM: 114.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 328.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 270.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 240.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 228.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 227.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 216.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 212.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 207.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 201.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 197.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 192.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 191.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 185.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 184.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 179.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 175.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 173.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 173.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 170.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 169.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 168.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 168.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 163.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 160.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 160.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 157.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 157.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 157.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 156.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 156.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 156.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 156.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 151.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 149.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 149.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 149.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 148.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 148.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 145.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 144.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 143.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 143.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 142.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 142.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 139.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 136.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 133.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 133.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 132.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 132.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 131.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 131.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 131.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 130.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 128.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 128.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 127.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 127.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 126.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 126.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 125.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 124.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 124.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 123.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 123.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 121.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 121.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 120.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 119.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 119.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 119.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 116.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 116.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 115.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 115.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 114.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 114.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 112.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 111.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 110.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 105.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 102.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 102.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 102.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 101.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 100.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 100.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 99.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 98.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 97.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 97.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 97.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 96.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 95.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 94.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 92.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 92.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 91.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 91.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 91.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 90.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 90.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 89.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 89.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 88.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 88.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 88.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 87.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 87.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 86.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 86.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 85.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 85.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 85.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 85.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 84.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 82.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 80.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 80.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 80.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 76.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 74.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 74.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 71.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 68.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 67.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 67.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 66.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 65.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 65.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 61.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 60.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 58.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 58.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 57.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 55.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 54.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 53.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 52.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 51.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 49.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 49.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 48.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 45.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 43.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 42.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 38.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 31.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 22.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 16.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 9.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 8.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 10.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 10.0
FF:10151-102I7 76 years, female 10.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 23.4
Pig sample Sample description nTPM
Amygdala
nTPM: 23.4
Samples: 4

Max nTPM: 32.9
Min nTPM: 16.9
Sample A Female 32.9
Sample B Female 20.8
Sample C Male 23.1
Sample D Male 16.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 20.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 20.8
Samples: 4

Max nTPM: 22.8
Min nTPM: 19.4
Sample A Male 20.7
Sample B Male 19.4
Sample C Female 22.8
Sample D Female 20.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.0
75692726 Antisense, RP_051214_02_A12, Mouse strain C57BL/6J (56 days, male) 3.0
74047845 Antisense, RP_051214_02_A12, Mouse strain C57BL/6J (56 days, male) 0.5

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