BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:22.9 nTPM
HPA:22.9 nTPM
GTEx:34.3 nTPM
FANTOM5:100.6 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA069291
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 22.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 21.2
2290 Female, age 72, unknown 28.5
2846 Female, age 79, unknown 24.8
1857 Female, age 85, left hemisphere 23.3
2289 Male, age 61, right hemisphere 22.5
1781 Male, age 74, unknown 20.6
2288 Male, age 75, left hemisphere 19.7
1854 Male, age 80, left hemisphere 18.4
2481 Female, age 94, left hemisphere 11.7
Claustrum
nTPM: 21.0
2284 Female, age 91, both hemispheres 25.0
2568 Male, age 61, both hemispheres 24.9
2198 Male, age 80, both hemispheres 24.7
2645 Female, age 72, unknown 24.0
2491 Male, age 75, both hemispheres 21.6
1956 Male, age 74, unknown 19.2
2196 Female, age 79, unknown 19.2
2292 Female, age 85, both hemispheres 16.7
2392 Female, age 94, both hemispheres 13.5
Globus pallidus, externus
nTPM: 5.2
2646 Male, age 61, right hemisphere 6.8
2395 Male, age 75, both hemispheres 6.4
2772 Female, age 79, unknown 4.6
2567 Female, age 72, unknown 4.3
1996 Male, age 80, right hemisphere 3.7
Globus pallidus, internus
nTPM: 3.8
2483 Female, age 94, right hemisphere 8.6
2566 Female, age 72, unknown 5.1
2287 Male, age 75, right hemisphere 4.7
2778 Female, age 91, both hemispheres 3.1
2037 Male, age 80, right hemisphere 2.3
1818 Male, age 74, unknown 1.5
2111 Female, age 85, right hemisphere 1.3
Nucleus accumbens
nTPM: 17.1
1783 Male, age 74, unknown 25.0
1856 Female, age 91, right hemisphere 21.3
1806 Female, age 85, left hemisphere 19.9
2824 Male, age 61, right hemisphere 19.5
2286 Male, age 75, left hemisphere 17.0
2698 Female, age 72, unknown 16.9
2732 Male, age 80, right hemisphere 11.7
2391 Female, age 94, left hemisphere 5.6
Nucleus basalis of Meynert
nTPM: 13.7
2484 Female, age 94, left hemisphere 18.5
2393 Male, age 80, right hemisphere 13.0
2569 Male, age 61, both hemispheres 12.4
2821 Male, age 75, both hemispheres 11.0
Nucleus of the diagonal band
nTPM: 22.9
2195 Female, age 85, both hemispheres 31.2
2775 Male, age 80, right hemisphere 24.9
2029 Male, age 61, right hemisphere 24.8
1812 Female, age 91, both hemispheres 18.9
1979 Male, age 74, unknown 15.0
Olfactory tubercle
nTPM: 22.1
2487 Female, age 94, left hemisphere 27.3
1998 Female, age 91, both hemispheres 22.3
1846 Male, age 80, right hemisphere 20.3
2856 Male, age 75, right hemisphere 18.7
Putamen
nTPM: 20.6
2489 Female, age 72, unknown 23.4
2466 Female, age 79, unknown 22.5
2647 Male, age 75, left hemisphere 22.4
1838 Male, age 80, right hemisphere 21.9
1829 Male, age 74, unknown 20.9
1937 Female, age 91, right hemisphere 18.7
2482 Female, age 94, left hemisphere 14.4
Septal nuclei
nTPM: 20.9
1960 Male, age 74, unknown 37.3
2059 Female, age 85, both hemispheres 25.8
2031 Female, age 72, unknown 24.5
2629 Female, age 94, right hemisphere 21.2
2009 Female, age 91, both hemispheres 17.4
2394 Male, age 61, left hemisphere 10.2
2199 Male, age 80, right hemisphere 9.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 34.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 27.6
Samples: 246

Max nTPM: 65.0
Min nTPM: 2.2
Std nTPM: 14.6
Median nTPM: 28.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 65.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 62.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 57.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 57.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 55.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 54.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 54.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 53.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 53.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 52.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 51.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 34.3
Samples: 246

Max nTPM: 66.9
Min nTPM: 3.2
Std nTPM: 16.3
Median nTPM: 38.6
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 66.9
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 66.8
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 63.1
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 62.9
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 62.1
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 62.0
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 62.0
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 61.6
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 61.6
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 61.2
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 59.8
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Brain - Putamen (basal ganglia)
Average nTPM: 24.6
Samples: 205

Max nTPM: 54.4
Min nTPM: 2.3
Std nTPM: 14.5
Median nTPM: 23.7
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 54.4
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 53.3
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 53.0
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 52.4
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 52.3
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 51.8
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 51.0
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 48.8
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 48.8
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 48.8
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 48.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 100.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 94.3
FF:10164-103B2 76 years, female 94.3
Globus pallidus
Scaled Tags Per Million: 51.5
FF:10175-103C4 60 years, female 60.7
FF:10161-103A8 76 years, female 42.2
Nucleus accumbens
Scaled Tags Per Million: 85.7
FF:10037-101F1 23-56 years, mixed 85.7
Putamen
Scaled Tags Per Million: 100.6
FF:10176-103C5 60 years, female 100.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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