MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:88.3 nTPM
HPA:88.3 nTPM
GTEx:65.1 nTPM
FANTOM5:53.7 Scaled Tags Per Million
Pig:2.7 nTPM
Mouse:16.2 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 88.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 71.8
2586 Male, age 75, left hemisphere 90.9
1830 Male, age 51, unknown 81.2
1833 Male, age 53, unknown 78.5
2019 Male, age 18, unknown 78.2
2411 Female, age 72, unknown 69.6
2666 Male, age 74, left hemisphere 68.8
2828 Female, age 72, unknown 65.9
1870 Female, age 42, unknown 65.3
2219 Male, age 76, both hemispheres 62.5
1827 Male, age 72, unknown 57.3
Dorsal raphe nucleus
nTPM: 56.1
2750 Male, age 76, both hemispheres 71.4
2016 Female, age 72, unknown 62.3
1828 Male, age 53, unknown 54.1
2047 Male, age 72, unknown 47.7
2298 Female, age 72, unknown 45.1
Inferior colliculus
nTPM: 53.6
2849 Male, age 72, unknown 59.2
1890 Male, age 53, unknown 57.9
1848 Female, age 42, unknown 52.4
2097 Female, age 72, unknown 44.9
Median raphe nucleus
nTPM: 50.2
2220 Male, age 76, midline 50.2
Pedunculopontine tegmental nucleus
nTPM: 56.6
2334 Male, age 80, both hemispheres 60.3
2338 Male, age 61, both hemispheres 57.3
1921 Female, age 85, both hemispheres 52.3
Periaquaductal grey, anterior
nTPM: 52.7
2502 Female, age 75, unknown 57.9
1795 Male, age 51, unknown 50.9
1947 Male, age 18, unknown 49.5
Periaquaductal grey, dorsal
nTPM: 51.1
2464 Female, age 72, unknown 59.2
1831 Male, age 72, unknown 50.4
2850 Male, age 76, both hemispheres 50.3
1840 Male, age 53, unknown 44.4
Periaquaductal grey, lateral
nTPM: 51.9
2272 Male, age 74, both hemispheres 53.6
2053 Male, age 18, unknown 52.7
2140 Male, age 76, both hemispheres 49.4
Pretectal area
nTPM: 58.1
2407 Male, age 75, both hemispheres 77.4
1815 Male, age 53, unknown 72.8
2007 Male, age 72, unknown 65.5
2316 Male, age 76, right hemisphere 62.9
1817 Female, age 42, unknown 60.5
2825 Male, age 18, unknown 56.3
1816 Male, age 51, unknown 50.4
2273 Male, age 74, both hemispheres 49.6
1944 Female, age 72, unknown 48.9
2224 Female, age 72, unknown 47.5
2667 Female, age 75, unknown 47.5
Red nucleus
nTPM: 88.3
1904 Male, age 53, unknown 100.8
1865 Male, age 51, unknown 95.5
2823 Male, age 76, right hemisphere 94.7
2785 Male, age 18, unknown 94.5
2503 Female, age 72, unknown 92.0
2584 Male, age 75, left hemisphere 90.9
2588 Male, age 74, left hemisphere 90.9
2769 Male, age 72, unknown 88.2
2227 Male, age 72, unknown 86.4
1821 Female, age 72, unknown 78.1
1954 Female, age 42, unknown 75.6
2725 Female, age 75, unknown 72.2
Substantia nigra
nTPM: 63.2
2583 Male, age 75, right hemisphere 75.2
2699 Male, age 18, unknown 71.0
2590 Female, age 75, unknown 69.4
2409 Female, age 72, unknown 65.7
1851 Male, age 51, unknown 64.9
1889 Female, age 72, unknown 61.4
2665 Male, age 74, both hemispheres 60.7
1941 Male, age 53, unknown 55.2
2241 Male, age 72, unknown 55.2
1916 Female, age 42, unknown 53.5
Superior colliculus
nTPM: 68.3
1995 Male, age 72, unknown 88.3
2668 Female, age 75, unknown 80.4
1913 Female, age 42, unknown 79.8
2664 Male, age 75, both hemispheres 76.5
1895 Male, age 76, right hemisphere 68.1
2587 Male, age 74, left hemisphere 65.1
1839 Male, age 51, unknown 63.0
1796 Male, age 53, unknown 57.8
2261 Male, age 18, unknown 54.1
2087 Female, age 72, unknown 50.0
Ventral tegmental area
nTPM: 60.8
2223 Female, age 72, unknown 71.1
2410 Female, age 72, unknown 69.9
1942 Male, age 51, unknown 59.7
1915 Female, age 42, unknown 58.8
2021 Male, age 53, unknown 54.5
2218 Male, age 76, both hemispheres 51.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 65.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.1
Samples: 139

Max nTPM: 203.4
Min nTPM: 20.7
Std nTPM: 31.2
Median nTPM: 57.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 203.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 151.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 145.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 132.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 130.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 127.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 126.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 125.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 123.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 123.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 120.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.7
FF:10158-103A5 76 years, female 53.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 2.7
Pig sample Sample description nTPM
Midbrain
nTPM: 1.6
Samples: 4

Max nTPM: 2.4
Min nTPM: 0.8
Sample A Female 2.1
Sample B Female 2.4
Sample C Male 0.8
Sample D Male 1.2
Periaqueductal gray
nTPM: 2.7
Samples: 3

Max nTPM: 3.0
Min nTPM: 2.5
Sample B Female 2.7
Sample C Male 3.0
Sample D Male 2.5
Substantia nigra
nTPM: 2.3
Samples: 4

Max nTPM: 3.2
Min nTPM: 1.2
Sample A Female 3.2
Sample B Female 2.1
Sample C Male 2.6
Sample D Male 1.2
Superior colliculi
nTPM: 2.1
Samples: 4

Max nTPM: 3.1
Min nTPM: 1.1
Sample A Female 2.3
Sample B Female 3.1
Sample C Male 1.7
Sample D Male 1.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.2
Samples: 4

Max nTPM: 17.1
Min nTPM: 14.5
Sample A Male 14.5
Sample B Male 16.6
Sample C Female 17.1
Sample D Female 16.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
71380983 Antisense, RP_050426_02_H07, Mouse strain C57BL/6J (56 days, male) 1.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.