MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:148.5 nTPM
HPA:148.5 nTPM
GTEx:79.0 nTPM
FANTOM5:86.8 Scaled Tags Per Million
Pig:36.8 nTPM
Mouse:46.5 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 148.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 142.4
2019 Male, age 18, unknown 149.2
2411 Female, age 72, unknown 149.2
2828 Female, age 72, unknown 144.2
1870 Female, age 42, unknown 141.9
1833 Male, age 53, unknown 141.8
2586 Male, age 75, left hemisphere 141.0
1830 Male, age 51, unknown 140.6
1827 Male, age 72, unknown 139.3
2219 Male, age 76, both hemispheres 139.3
2666 Male, age 74, left hemisphere 137.2
Dorsal raphe nucleus
nTPM: 142.6
2750 Male, age 76, both hemispheres 146.3
2298 Female, age 72, unknown 143.0
2047 Male, age 72, unknown 142.5
1828 Male, age 53, unknown 142.4
2016 Female, age 72, unknown 138.7
Inferior colliculus
nTPM: 139.2
1890 Male, age 53, unknown 141.5
2097 Female, age 72, unknown 140.8
1848 Female, age 42, unknown 138.6
2849 Male, age 72, unknown 135.7
Median raphe nucleus
nTPM: 143.7
2220 Male, age 76, midline 143.7
Pedunculopontine tegmental nucleus
nTPM: 143.6
2334 Male, age 80, both hemispheres 146.4
2338 Male, age 61, both hemispheres 144.5
1921 Female, age 85, both hemispheres 139.9
Periaquaductal grey, anterior
nTPM: 138.9
2502 Female, age 75, unknown 141.1
1947 Male, age 18, unknown 138.0
1795 Male, age 51, unknown 137.7
Periaquaductal grey, dorsal
nTPM: 135.2
2464 Female, age 72, unknown 136.2
2850 Male, age 76, both hemispheres 135.4
1831 Male, age 72, unknown 135.1
1840 Male, age 53, unknown 134.2
Periaquaductal grey, lateral
nTPM: 135.1
2272 Male, age 74, both hemispheres 138.0
2053 Male, age 18, unknown 134.6
2140 Male, age 76, both hemispheres 132.7
Pretectal area
nTPM: 139.9
1817 Female, age 42, unknown 145.4
2007 Male, age 72, unknown 144.7
1815 Male, age 53, unknown 144.1
2667 Female, age 75, unknown 142.5
1944 Female, age 72, unknown 141.7
1816 Male, age 51, unknown 140.9
2273 Male, age 74, both hemispheres 140.1
2407 Male, age 75, both hemispheres 136.4
2316 Male, age 76, right hemisphere 135.4
2224 Female, age 72, unknown 134.9
2825 Male, age 18, unknown 133.0
Red nucleus
nTPM: 146.2
1904 Male, age 53, unknown 150.2
1821 Female, age 72, unknown 150.0
1865 Male, age 51, unknown 150.0
2785 Male, age 18, unknown 149.4
2769 Male, age 72, unknown 147.3
1954 Female, age 42, unknown 147.0
2503 Female, age 72, unknown 146.8
2823 Male, age 76, right hemisphere 146.4
2227 Male, age 72, unknown 145.8
2588 Male, age 74, left hemisphere 143.0
2725 Female, age 75, unknown 142.7
2584 Male, age 75, left hemisphere 135.7
Substantia nigra
nTPM: 147.7
1916 Female, age 42, unknown 161.3
1851 Male, age 51, unknown 156.7
2699 Male, age 18, unknown 153.6
1889 Female, age 72, unknown 147.8
2409 Female, age 72, unknown 145.9
1941 Male, age 53, unknown 145.1
2241 Male, age 72, unknown 143.7
2590 Female, age 75, unknown 141.4
2665 Male, age 74, both hemispheres 141.1
2583 Male, age 75, right hemisphere 140.4
Superior colliculus
nTPM: 140.0
2587 Male, age 74, left hemisphere 144.0
1995 Male, age 72, unknown 143.8
1913 Female, age 42, unknown 143.1
2668 Female, age 75, unknown 142.9
1796 Male, age 53, unknown 140.6
2087 Female, age 72, unknown 140.3
1839 Male, age 51, unknown 137.0
1895 Male, age 76, right hemisphere 136.5
2664 Male, age 75, both hemispheres 136.4
2261 Male, age 18, unknown 135.7
Ventral tegmental area
nTPM: 148.5
2410 Female, age 72, unknown 158.7
1915 Female, age 42, unknown 151.5
2218 Male, age 76, both hemispheres 150.9
2223 Female, age 72, unknown 149.0
1942 Male, age 51, unknown 141.6
2021 Male, age 53, unknown 139.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 79.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 79.0
Samples: 139

Max nTPM: 184.7
Min nTPM: 30.1
Std nTPM: 21.1
Median nTPM: 76.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 184.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 160.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 144.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 129.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 120.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 120.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 118.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 115.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 114.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 114.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 108.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 86.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 86.8
FF:10158-103A5 76 years, female 86.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 36.8
Pig sample Sample description nTPM
Midbrain
nTPM: 36.8
Samples: 4

Max nTPM: 48.6
Min nTPM: 28.9
Sample A Female 48.6
Sample B Female 34.1
Sample C Male 35.7
Sample D Male 28.9
Periaqueductal gray
nTPM: 29.1
Samples: 3

Max nTPM: 33.9
Min nTPM: 26.6
Sample B Female 26.7
Sample C Male 33.9
Sample D Male 26.6
Substantia nigra
nTPM: 34.0
Samples: 4

Max nTPM: 45.1
Min nTPM: 24.5
Sample A Female 45.1
Sample B Female 24.5
Sample C Male 38.4
Sample D Male 28.1
Superior colliculi
nTPM: 35.2
Samples: 4

Max nTPM: 44.8
Min nTPM: 24.6
Sample A Female 44.8
Sample B Female 24.6
Sample C Male 38.5
Sample D Male 32.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 46.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.6
Samples: 4

Max nTPM: 59.2
Min nTPM: 37.5
Sample A Male 59.2
Sample B Male 37.5
Sample C Female 41.5
Sample D Female 48.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
69134256 Antisense, RP_050321_02_F03, Mouse strain C57BL/6J (56 days, male) 1.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.