BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:46.7 nTPM
HPA:46.7 nTPM
GTEx:50.0 nTPM
FANTOM5:17.8 Scaled Tags Per Million
Pig:8.4 nTPM
Mouse:17.2 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA026745
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 46.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 44.2
1781 Male, age 74, unknown 46.0
2290 Female, age 72, unknown 45.5
1857 Female, age 85, left hemisphere 45.4
2846 Female, age 79, unknown 44.6
1854 Male, age 80, left hemisphere 44.4
2288 Male, age 75, left hemisphere 43.7
2481 Female, age 94, left hemisphere 42.0
2289 Male, age 61, right hemisphere 41.8
Claustrum
nTPM: 43.9
2198 Male, age 80, both hemispheres 46.1
2196 Female, age 79, unknown 45.5
2568 Male, age 61, both hemispheres 45.3
1956 Male, age 74, unknown 43.7
2491 Male, age 75, both hemispheres 43.5
2284 Female, age 91, both hemispheres 43.2
2645 Female, age 72, unknown 42.8
2392 Female, age 94, both hemispheres 42.5
2292 Female, age 85, both hemispheres 42.4
Globus pallidus, externus
nTPM: 46.7
1996 Male, age 80, right hemisphere 49.5
2646 Male, age 61, right hemisphere 49.4
2772 Female, age 79, unknown 45.5
2395 Male, age 75, both hemispheres 44.7
2567 Female, age 72, unknown 44.2
Globus pallidus, internus
nTPM: 46.4
2778 Female, age 91, both hemispheres 48.2
2037 Male, age 80, right hemisphere 47.5
2287 Male, age 75, right hemisphere 47.0
2483 Female, age 94, right hemisphere 46.7
1818 Male, age 74, unknown 45.6
2566 Female, age 72, unknown 45.3
2111 Female, age 85, right hemisphere 44.7
Nucleus accumbens
nTPM: 45.3
2698 Female, age 72, unknown 48.0
1783 Male, age 74, unknown 47.0
1806 Female, age 85, left hemisphere 46.2
1856 Female, age 91, right hemisphere 46.2
2732 Male, age 80, right hemisphere 45.1
2824 Male, age 61, right hemisphere 44.4
2286 Male, age 75, left hemisphere 43.1
2391 Female, age 94, left hemisphere 42.5
Nucleus basalis of Meynert
nTPM: 45.5
2569 Male, age 61, both hemispheres 53.2
2393 Male, age 80, right hemisphere 43.4
2821 Male, age 75, both hemispheres 43.3
2484 Female, age 94, left hemisphere 42.1
Nucleus of the diagonal band
nTPM: 43.7
2775 Male, age 80, right hemisphere 45.1
2195 Female, age 85, both hemispheres 44.2
1812 Female, age 91, both hemispheres 43.9
1979 Male, age 74, unknown 42.9
2029 Male, age 61, right hemisphere 42.6
Olfactory tubercle
nTPM: 42.5
1846 Male, age 80, right hemisphere 44.7
1998 Female, age 91, both hemispheres 42.0
2856 Male, age 75, right hemisphere 41.9
2487 Female, age 94, left hemisphere 41.2
Putamen
nTPM: 44.0
2647 Male, age 75, left hemisphere 46.5
1829 Male, age 74, unknown 45.1
1838 Male, age 80, right hemisphere 44.2
2489 Female, age 72, unknown 43.6
2482 Female, age 94, left hemisphere 43.5
1937 Female, age 91, right hemisphere 43.0
2466 Female, age 79, unknown 42.2
Septal nuclei
nTPM: 43.2
2394 Male, age 61, left hemisphere 44.2
1960 Male, age 74, unknown 44.1
2199 Male, age 80, right hemisphere 43.5
2059 Female, age 85, both hemispheres 43.3
2031 Female, age 72, unknown 42.8
2009 Female, age 91, both hemispheres 42.4
2629 Female, age 94, right hemisphere 42.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 50.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 44.5
Samples: 246

Max nTPM: 73.4
Min nTPM: 23.2
Std nTPM: 8.3
Median nTPM: 43.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 73.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 67.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 67.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 67.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 67.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 66.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 66.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 64.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 62.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 62.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 61.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 50.0
Samples: 246

Max nTPM: 112.8
Min nTPM: 28.2
Std nTPM: 9.8
Median nTPM: 49.0
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 112.8
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 81.7
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 78.7
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 75.0
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 73.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 73.3
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 73.2
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 73.0
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 70.8
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 70.5
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 68.7
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Brain - Putamen (basal ganglia)
Average nTPM: 47.2
Samples: 205

Max nTPM: 74.4
Min nTPM: 24.3
Std nTPM: 8.3
Median nTPM: 45.7
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 74.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 70.9
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 70.1
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 68.3
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 66.8
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 66.1
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 65.6
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 63.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 63.4
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 62.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 62.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 12.1
FF:10164-103B2 76 years, female 12.1
Globus pallidus
Scaled Tags Per Million: 17.8
FF:10175-103C4 60 years, female 19.7
FF:10161-103A8 76 years, female 15.9
Nucleus accumbens
Scaled Tags Per Million: 12.6
FF:10037-101F1 23-56 years, mixed 12.6
Putamen
Scaled Tags Per Million: 15.8
FF:10176-103C5 60 years, female 15.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 8.4
Pig sample Sample description nTPM
Caudate
nTPM: 8.4
Samples: 4

Max nTPM: 10.3
Min nTPM: 6.9
Sample A Female 6.9
Sample B Female 9.1
Sample C Male 10.3
Sample D Male 7.3
Putamen
nTPM: 7.1
Samples: 4

Max nTPM: 9.1
Min nTPM: 5.0
Sample A Female 5.0
Sample B Female 5.7
Sample C Male 8.7
Sample D Male 9.1
Septum
nTPM: 6.2
Samples: 4

Max nTPM: 7.5
Min nTPM: 4.8
Sample A Female 7.5
Sample B Female 7.2
Sample C Male 5.2
Sample D Male 4.8
Ventral pallidum
nTPM: 6.7
Samples: 4

Max nTPM: 8.3
Min nTPM: 5.5
Sample A Female 5.5
Sample B Female 8.3
Sample C Male 6.1
Sample D Male 7.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 17.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 14.8
Samples: 4

Max nTPM: 17.5
Min nTPM: 11.9
Sample A Male 17.5
Sample B Male 16.0
Sample C Female 11.9
Sample D Female 13.8
Septum
nTPM: 17.2
Samples: 4

Max nTPM: 17.8
Min nTPM: 16.6
Sample A Male 17.7
Sample B Male 16.6
Sample C Female 16.7
Sample D Female 17.8
Ventral forebrain
nTPM: 16.7
Samples: 4

Max nTPM: 17.8
Min nTPM: 14.3
Sample A Male 14.3
Sample B Male 17.8
Sample C Female 17.8
Sample D Female 16.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
67979050 Antisense, RP_040923_02_C11, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
67979050 Antisense, RP_040923_02_C11, Mouse strain C57BL/6J (56 days, male) 0.1

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