MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:13.0 nTPM
HPA:13.0 nTPM
GTEx:17.8 nTPM
FANTOM5:2.7 Scaled Tags Per Million
Pig:39.9 nTPM
Mouse:83.9 nTPM
Allen mouse:8.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 13.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 3.9
2666 Male, age 74, left hemisphere 11.9
2219 Male, age 76, both hemispheres 10.6
1827 Male, age 72, unknown 8.4
2411 Female, age 72, unknown 5.2
2828 Female, age 72, unknown 2.8
1830 Male, age 51, unknown 0.0
1833 Male, age 53, unknown 0.0
1870 Female, age 42, unknown 0.0
2019 Male, age 18, unknown 0.0
2586 Male, age 75, left hemisphere 0.0
Dorsal raphe nucleus
nTPM: 3.8
2298 Female, age 72, unknown 7.2
2047 Male, age 72, unknown 6.7
2750 Male, age 76, both hemispheres 3.2
1828 Male, age 53, unknown 1.7
2016 Female, age 72, unknown 0.0
Inferior colliculus
nTPM: 0.8
2097 Female, age 72, unknown 3.5
1848 Female, age 42, unknown 0.0
1890 Male, age 53, unknown 0.0
2849 Male, age 72, unknown 0.0
Median raphe nucleus
nTPM: 13.0
2220 Male, age 76, midline 13.0
Pedunculopontine tegmental nucleus
nTPM: 4.7
1921 Female, age 85, both hemispheres 11.7
2334 Male, age 80, both hemispheres 2.0
2338 Male, age 61, both hemispheres 0.5
Periaquaductal grey, anterior
nTPM: 11.4
1947 Male, age 18, unknown 14.9
1795 Male, age 51, unknown 11.1
2502 Female, age 75, unknown 8.2
Periaquaductal grey, dorsal
nTPM: 0.0
1831 Male, age 72, unknown 0.1
1840 Male, age 53, unknown 0.0
2464 Female, age 72, unknown 0.0
2850 Male, age 76, both hemispheres 0.0
Periaquaductal grey, lateral
nTPM: 0.4
2053 Male, age 18, unknown 1.4
2140 Male, age 76, both hemispheres 0.0
2272 Male, age 74, both hemispheres 0.0
Pretectal area
nTPM: 4.9
1944 Female, age 72, unknown 10.3
1816 Male, age 51, unknown 9.8
2007 Male, age 72, unknown 8.2
1817 Female, age 42, unknown 7.0
2667 Female, age 75, unknown 6.9
1815 Male, age 53, unknown 6.1
2224 Female, age 72, unknown 4.3
2825 Male, age 18, unknown 1.0
2273 Male, age 74, both hemispheres 0.0
2316 Male, age 76, right hemisphere 0.0
2407 Male, age 75, both hemispheres 0.0
Red nucleus
nTPM: 0.4
1821 Female, age 72, unknown 4.8
1954 Female, age 42, unknown 0.7
1865 Male, age 51, unknown 0.0
1904 Male, age 53, unknown 0.0
2227 Male, age 72, unknown 0.0
2503 Female, age 72, unknown 0.0
2584 Male, age 75, left hemisphere 0.0
2588 Male, age 74, left hemisphere 0.0
2725 Female, age 75, unknown 0.0
2769 Male, age 72, unknown 0.0
2785 Male, age 18, unknown 0.0
2823 Male, age 76, right hemisphere 0.0
Substantia nigra
nTPM: 12.7
2665 Male, age 74, both hemispheres 25.7
1916 Female, age 42, unknown 24.0
1941 Male, age 53, unknown 16.7
2241 Male, age 72, unknown 15.7
1851 Male, age 51, unknown 15.0
2409 Female, age 72, unknown 13.8
1889 Female, age 72, unknown 8.1
2699 Male, age 18, unknown 6.9
2590 Female, age 75, unknown 0.8
2583 Male, age 75, right hemisphere 0.0
Superior colliculus
nTPM: 2.3
2668 Female, age 75, unknown 7.1
1796 Male, age 53, unknown 7.0
2087 Female, age 72, unknown 4.4
1895 Male, age 76, right hemisphere 2.3
2261 Male, age 18, unknown 2.0
1839 Male, age 51, unknown 0.0
1913 Female, age 42, unknown 0.0
1995 Male, age 72, unknown 0.0
2587 Male, age 74, left hemisphere 0.0
2664 Male, age 75, both hemispheres 0.0
Ventral tegmental area
nTPM: 11.5
2218 Male, age 76, both hemispheres 24.9
2410 Female, age 72, unknown 20.2
1915 Female, age 42, unknown 13.5
1942 Male, age 51, unknown 8.2
2021 Male, age 53, unknown 2.3
2223 Female, age 72, unknown 0.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.8
Samples: 139

Max nTPM: 79.1
Min nTPM: 0.0
Std nTPM: 16.7
Median nTPM: 13.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 79.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 77.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 72.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 72.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 52.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 50.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 48.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 46.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 44.7
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 42.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 42.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.7
FF:10158-103A5 76 years, female 2.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 39.9
Pig sample Sample description nTPM
Midbrain
nTPM: 36.0
Samples: 4

Max nTPM: 52.9
Min nTPM: 12.3
Sample A Female 12.3
Sample B Female 38.8
Sample C Male 52.9
Sample D Male 40.0
Periaqueductal gray
nTPM: 29.5
Samples: 3

Max nTPM: 34.8
Min nTPM: 23.0
Sample B Female 30.7
Sample C Male 34.8
Sample D Male 23.0
Substantia nigra
nTPM: 39.9
Samples: 4

Max nTPM: 67.5
Min nTPM: 8.6
Sample A Female 67.5
Sample B Female 30.1
Sample C Male 53.2
Sample D Male 8.6
Superior colliculi
nTPM: 39.4
Samples: 4

Max nTPM: 62.9
Min nTPM: 25.2
Sample A Female 37.6
Sample B Female 25.2
Sample C Male 62.9
Sample D Male 32.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 83.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 83.9
Samples: 4

Max nTPM: 91.3
Min nTPM: 75.2
Sample A Male 75.2
Sample B Male 82.3
Sample C Female 91.3
Sample D Female 86.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.5
69201624 Antisense, RP_050317_03_C09, Mouse strain C57BL/6J (56 days, male) 9.3
72340123 Antisense, RP_051101_02_A04, Mouse strain C57BL/6J (56 days, male) 7.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.