MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:30.0 nTPM
HPA:30.0 nTPM
GTEx:36.2 nTPM
FANTOM5:106.1 Scaled Tags Per Million
Pig:35.7 nTPM
Mouse:55.7 nTPM
Allen mouse:8.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.3
2666 Male, age 74, left hemisphere 32.5
1870 Female, age 42, unknown 30.5
2586 Male, age 75, left hemisphere 30.5
2219 Male, age 76, both hemispheres 28.3
1827 Male, age 72, unknown 28.2
1833 Male, age 53, unknown 27.4
2828 Female, age 72, unknown 27.1
1830 Male, age 51, unknown 27.0
2019 Male, age 18, unknown 26.7
2411 Female, age 72, unknown 24.7
Dorsal raphe nucleus
nTPM: 23.4
2016 Female, age 72, unknown 26.3
1828 Male, age 53, unknown 24.7
2750 Male, age 76, both hemispheres 23.9
2047 Male, age 72, unknown 22.8
2298 Female, age 72, unknown 19.5
Inferior colliculus
nTPM: 27.1
2849 Male, age 72, unknown 32.1
1848 Female, age 42, unknown 27.6
1890 Male, age 53, unknown 27.2
2097 Female, age 72, unknown 21.5
Median raphe nucleus
nTPM: 28.1
2220 Male, age 76, midline 28.1
Pedunculopontine tegmental nucleus
nTPM: 27.4
2338 Male, age 61, both hemispheres 31.3
2334 Male, age 80, both hemispheres 28.3
1921 Female, age 85, both hemispheres 22.6
Periaquaductal grey, anterior
nTPM: 25.3
1947 Male, age 18, unknown 25.9
1795 Male, age 51, unknown 25.2
2502 Female, age 75, unknown 24.7
Periaquaductal grey, dorsal
nTPM: 27.5
2850 Male, age 76, both hemispheres 31.7
1831 Male, age 72, unknown 28.6
1840 Male, age 53, unknown 25.4
2464 Female, age 72, unknown 24.5
Periaquaductal grey, lateral
nTPM: 24.6
2140 Male, age 76, both hemispheres 25.8
2053 Male, age 18, unknown 25.0
2272 Male, age 74, both hemispheres 22.9
Pretectal area
nTPM: 27.2
1815 Male, age 53, unknown 30.6
1817 Female, age 42, unknown 30.4
1816 Male, age 51, unknown 30.2
2407 Male, age 75, both hemispheres 29.6
1944 Female, age 72, unknown 29.4
2007 Male, age 72, unknown 28.2
2825 Male, age 18, unknown 26.6
2667 Female, age 75, unknown 25.7
2273 Male, age 74, both hemispheres 23.1
2224 Female, age 72, unknown 23.0
2316 Male, age 76, right hemisphere 21.9
Red nucleus
nTPM: 30.0
2503 Female, age 72, unknown 37.2
1865 Male, age 51, unknown 32.5
2725 Female, age 75, unknown 32.5
2588 Male, age 74, left hemisphere 31.9
1821 Female, age 72, unknown 29.3
2584 Male, age 75, left hemisphere 29.0
1904 Male, age 53, unknown 28.8
1954 Female, age 42, unknown 28.5
2227 Male, age 72, unknown 28.0
2785 Male, age 18, unknown 27.8
2769 Male, age 72, unknown 27.5
2823 Male, age 76, right hemisphere 26.4
Substantia nigra
nTPM: 26.9
2699 Male, age 18, unknown 32.7
2665 Male, age 74, both hemispheres 30.3
2590 Female, age 75, unknown 27.9
1889 Female, age 72, unknown 27.2
2583 Male, age 75, right hemisphere 26.7
1941 Male, age 53, unknown 26.2
2409 Female, age 72, unknown 25.5
1916 Female, age 42, unknown 25.3
1851 Male, age 51, unknown 25.2
2241 Male, age 72, unknown 21.7
Superior colliculus
nTPM: 27.1
1913 Female, age 42, unknown 31.2
2587 Male, age 74, left hemisphere 30.3
1995 Male, age 72, unknown 30.1
1839 Male, age 51, unknown 26.6
2664 Male, age 75, both hemispheres 26.6
2087 Female, age 72, unknown 25.9
1796 Male, age 53, unknown 25.7
2668 Female, age 75, unknown 25.4
1895 Male, age 76, right hemisphere 25.0
2261 Male, age 18, unknown 24.2
Ventral tegmental area
nTPM: 26.1
2223 Female, age 72, unknown 30.1
2218 Male, age 76, both hemispheres 27.4
2021 Male, age 53, unknown 26.5
1915 Female, age 42, unknown 24.8
1942 Male, age 51, unknown 24.1
2410 Female, age 72, unknown 23.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 36.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.2
Samples: 139

Max nTPM: 75.4
Min nTPM: 17.9
Std nTPM: 8.5
Median nTPM: 34.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 75.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 63.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 58.0
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 55.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 53.6
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 52.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 52.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 50.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 49.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 49.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 48.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 106.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 106.1
FF:10158-103A5 76 years, female 106.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 35.7
Pig sample Sample description nTPM
Midbrain
nTPM: 35.8
Samples: 4

Max nTPM: 43.5
Min nTPM: 28.9
Sample A Female 43.5
Sample B Female 32.4
Sample C Male 38.3
Sample D Male 28.9
Periaqueductal gray
nTPM: 29.7
Samples: 3

Max nTPM: 32.9
Min nTPM: 26.9
Sample B Female 29.3
Sample C Male 32.9
Sample D Male 26.9
Substantia nigra
nTPM: 33.2
Samples: 4

Max nTPM: 35.6
Min nTPM: 31.1
Sample A Female 35.6
Sample B Female 31.3
Sample C Male 34.8
Sample D Male 31.1
Superior colliculi
nTPM: 34.3
Samples: 4

Max nTPM: 36.5
Min nTPM: 31.2
Sample A Female 36.3
Sample B Female 31.2
Sample C Male 36.5
Sample D Male 33.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 55.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 55.7
Samples: 4

Max nTPM: 62.2
Min nTPM: 48.9
Sample A Male 48.9
Sample B Male 55.9
Sample C Female 62.2
Sample D Female 55.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.3
69671947 Antisense, RP_050428_02_F09, Mouse strain C57BL/6J (56 days, male) 8.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.