HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:25.9 nTPM
HPA:25.9 nTPM
GTEx:22.8 nTPM
FANTOM5:42.9 Scaled Tags Per Million
Pig:29.9 nTPM
Mouse:71.3 nTPM
Allen mouse:1.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA002043
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 25.9
Sample id Sample description nTPM
Hippocampus
nTPM: 8.1
1898 Male, age 80, left hemisphere 10.5
1911 Female, age 85, right hemisphere 10.1
2148 Female, age 91, left hemisphere 7.6
2621 Female, age 67, right hemisphere 7.2
2529 Female, age 94, left hemisphere 7.0
1855 Male, age 76, left hemisphere 6.0
Dentate gyrus
nTPM: 8.7
1927 Female, age 91, both hemispheres 10.9
2530 Female, age 94, left hemisphere 9.7
2531 Female, age 67, both hemispheres 9.0
2010 Male, age 76, both hemispheres 8.6
2246 Female, age 85, both hemispheres 8.5
2528 Male, age 74, both hemispheres 5.2
Entorhinal gyrus
nTPM: 21.8
2764 Male, age 80, right hemisphere 28.1
2613 Female, age 94, left hemisphere 24.7
1787 Male, age 76, left hemisphere 20.9
1938 Female, age 85, left hemisphere 20.9
2686 Male, age 75, right hemisphere 19.7
2117 Female, age 91, right hemisphere 16.3
Hippocampus, CA1
nTPM: 8.7
2045 Male, age 76, both hemispheres 10.2
2749 Male, age 80, left hemisphere 10.1
2082 Female, age 91, right hemisphere 9.0
1873 Female, age 85, both hemispheres 7.4
2527 Male, age 74, both hemispheres 6.9
Hippocampus, CA2
nTPM: 11.6
1892 Male, age 76, both hemispheres 14.0
2437 Female, age 94, left hemisphere 13.8
1940 Female, age 85, left hemisphere 13.0
2113 Female, age 91, right hemisphere 12.3
2249 Male, age 74, both hemispheres 9.2
1963 Male, age 80, left hemisphere 7.0
Hippocampus, CA3
nTPM: 10.6
1867 Male, age 76, both hemispheres 16.6
1891 Female, age 85, both hemispheres 15.1
2137 Male, age 80, left hemisphere 11.4
2620 Female, age 94, left hemisphere 10.4
2436 Male, age 74, both hemispheres 5.7
2861 Female, age 67, both hemispheres 4.6
Parahippocampal cortex
nTPM: 19.9
1850 Male, age 80, both hemispheres 34.4
1990 Female, age 91, right hemisphere 26.1
2693 Female, age 94, both hemispheres 23.0
2532 Female, age 72, left hemisphere 21.7
1933 Female, age 85, both hemispheres 20.9
2018 Male, age 76, both hemispheres 16.0
2245 Female, age 91, both hemispheres 14.9
2692 Male, age 74, both hemispheres 14.4
2622 Female, age 67, right hemisphere 14.0
2250 Female, age 67, right hemisphere 13.1
Perirhinal gyrus
nTPM: 25.9
1794 Male, age 80, right hemisphere 30.6
2848 Male, age 76, right hemisphere 28.7
1841 Female, age 85, right hemisphere 27.4
1847 Female, age 91, left hemisphere 23.0
2521 Female, age 94, right hemisphere 19.9
Subiculum
nTPM: 13.7
1977 Female, age 85, both hemispheres 21.0
1901 Male, age 80, both hemispheres 17.0
2042 Male, age 76, both hemispheres 15.5
2438 Female, age 94, left hemisphere 13.7
2619 Male, age 74, both hemispheres 8.4
2729 Female, age 91, right hemisphere 6.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 22.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 22.8
Samples: 197

Max nTPM: 54.5
Min nTPM: 8.4
Std nTPM: 8.2
Median nTPM: 21.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 54.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 53.1
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 51.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 48.7
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 45.5
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 40.5
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 40.2
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 38.1
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 38.0
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 37.2
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 36.9
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 42.9
FF:10169-103B7 60 years, female 51.2
FF:10153-102I9 76 years, female 34.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 29.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 30.0
Samples: 4

Max nTPM: 37.8
Min nTPM: 27.0
Sample A Female 37.8
Sample B Female 27.1
Sample C Male 27.0
Sample D Male 27.9
Entorhinal cortex
nTPM: 15.9
Samples: 4

Max nTPM: 18.8
Min nTPM: 13.7
Sample A Female 13.7
Sample B Female 18.8
Sample C Male 13.8
Sample D Male 17.3
Subiculum
nTPM: 15.6
Samples: 4

Max nTPM: 17.4
Min nTPM: 14.7
Sample A Female 17.4
Sample B Female 15.1
Sample C Male 14.7
Sample D Male 15.0
Ventral hippocampus
nTPM: 20.3
Samples: 4

Max nTPM: 26.8
Min nTPM: 16.1
Sample A Female 21.2
Sample B Female 16.1
Sample C Male 17.2
Sample D Male 26.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 71.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 50.9
Samples: 4

Max nTPM: 57.7
Min nTPM: 42.2
Sample A Male 57.7
Sample B Male 51.8
Sample C Female 51.8
Sample D Female 42.2
Hippocampal formation
nTPM: 71.3
Samples: 4

Max nTPM: 89.4
Min nTPM: 59.2
Sample A Male 59.2
Sample B Male 70.2
Sample C Female 89.4
Sample D Female 66.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.8
583860 Antisense, RP_040831_01_B11, Mouse strain C57BL/6J (56 days, male) 1.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.