MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:64.3 nTPM
HPA:64.3 nTPM
GTEx:55.1 nTPM
FANTOM5:59.9 Scaled Tags Per Million
Pig:39.6 nTPM
Mouse:18.2 nTPM
Allen mouse:7.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 64.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.8
1830 Male, age 51, unknown 61.3
1833 Male, age 53, unknown 60.2
2019 Male, age 18, unknown 60.1
2411 Female, age 72, unknown 59.8
2586 Male, age 75, left hemisphere 58.9
2828 Female, age 72, unknown 55.3
1870 Female, age 42, unknown 55.1
2666 Male, age 74, left hemisphere 48.4
1827 Male, age 72, unknown 45.5
2219 Male, age 76, both hemispheres 43.0
Dorsal raphe nucleus
nTPM: 40.5
2750 Male, age 76, both hemispheres 49.9
1828 Male, age 53, unknown 42.4
2016 Female, age 72, unknown 40.2
2047 Male, age 72, unknown 37.1
2298 Female, age 72, unknown 32.9
Inferior colliculus
nTPM: 41.3
2849 Male, age 72, unknown 43.2
1848 Female, age 42, unknown 43.0
1890 Male, age 53, unknown 41.5
2097 Female, age 72, unknown 37.5
Median raphe nucleus
nTPM: 41.7
2220 Male, age 76, midline 41.7
Pedunculopontine tegmental nucleus
nTPM: 44.3
2334 Male, age 80, both hemispheres 48.4
1921 Female, age 85, both hemispheres 43.1
2338 Male, age 61, both hemispheres 41.5
Periaquaductal grey, anterior
nTPM: 41.2
2502 Female, age 75, unknown 44.6
1947 Male, age 18, unknown 39.7
1795 Male, age 51, unknown 39.2
Periaquaductal grey, dorsal
nTPM: 38.0
2464 Female, age 72, unknown 43.1
1831 Male, age 72, unknown 38.8
2850 Male, age 76, both hemispheres 38.6
1840 Male, age 53, unknown 31.2
Periaquaductal grey, lateral
nTPM: 40.1
2053 Male, age 18, unknown 40.8
2272 Male, age 74, both hemispheres 40.2
2140 Male, age 76, both hemispheres 39.2
Pretectal area
nTPM: 43.4
2316 Male, age 76, right hemisphere 51.5
1815 Male, age 53, unknown 50.9
2407 Male, age 75, both hemispheres 49.9
1817 Female, age 42, unknown 48.2
2007 Male, age 72, unknown 47.3
2825 Male, age 18, unknown 43.1
2667 Female, age 75, unknown 41.9
1944 Female, age 72, unknown 37.4
1816 Male, age 51, unknown 36.0
2273 Male, age 74, both hemispheres 36.0
2224 Female, age 72, unknown 35.4
Red nucleus
nTPM: 64.3
2769 Male, age 72, unknown 70.9
2785 Male, age 18, unknown 70.5
1904 Male, age 53, unknown 70.1
2227 Male, age 72, unknown 68.5
2823 Male, age 76, right hemisphere 67.8
1865 Male, age 51, unknown 67.7
1821 Female, age 72, unknown 64.1
2588 Male, age 74, left hemisphere 61.8
2503 Female, age 72, unknown 60.0
1954 Female, age 42, unknown 59.3
2584 Male, age 75, left hemisphere 58.1
2725 Female, age 75, unknown 52.5
Substantia nigra
nTPM: 42.6
2583 Male, age 75, right hemisphere 54.0
2590 Female, age 75, unknown 51.1
1889 Female, age 72, unknown 45.9
2409 Female, age 72, unknown 44.8
2699 Male, age 18, unknown 43.5
1851 Male, age 51, unknown 42.6
2665 Male, age 74, both hemispheres 40.4
1941 Male, age 53, unknown 37.2
1916 Female, age 42, unknown 36.4
2241 Male, age 72, unknown 30.2
Superior colliculus
nTPM: 48.0
1995 Male, age 72, unknown 62.3
1913 Female, age 42, unknown 61.4
1839 Male, age 51, unknown 50.5
2587 Male, age 74, left hemisphere 46.4
1895 Male, age 76, right hemisphere 46.2
2664 Male, age 75, both hemispheres 45.7
1796 Male, age 53, unknown 44.8
2668 Female, age 75, unknown 44.1
2087 Female, age 72, unknown 40.5
2261 Male, age 18, unknown 38.4
Ventral tegmental area
nTPM: 46.1
2223 Female, age 72, unknown 55.9
2410 Female, age 72, unknown 52.2
1942 Male, age 51, unknown 44.8
2021 Male, age 53, unknown 43.8
2218 Male, age 76, both hemispheres 40.2
1915 Female, age 42, unknown 39.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 55.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 55.1
Samples: 139

Max nTPM: 194.2
Min nTPM: 23.8
Std nTPM: 21.9
Median nTPM: 52.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 194.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 174.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 115.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 109.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 100.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 83.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 81.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 79.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 78.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 78.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 75.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 59.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 59.9
FF:10158-103A5 76 years, female 59.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 39.6
Pig sample Sample description nTPM
Midbrain
nTPM: 39.3
Samples: 4

Max nTPM: 69.5
Min nTPM: 26.8
Sample A Female 69.5
Sample B Female 33.0
Sample C Male 27.8
Sample D Male 26.8
Periaqueductal gray
nTPM: 27.6
Samples: 3

Max nTPM: 29.2
Min nTPM: 25.4
Sample B Female 28.1
Sample C Male 25.4
Sample D Male 29.2
Substantia nigra
nTPM: 39.6
Samples: 4

Max nTPM: 52.2
Min nTPM: 31.4
Sample A Female 39.3
Sample B Female 31.4
Sample C Male 35.3
Sample D Male 52.2
Superior colliculi
nTPM: 36.7
Samples: 4

Max nTPM: 40.9
Min nTPM: 31.5
Sample A Female 40.9
Sample B Female 34.8
Sample C Male 31.5
Sample D Male 39.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.2
Samples: 4

Max nTPM: 21.6
Min nTPM: 14.8
Sample A Male 21.0
Sample B Male 14.8
Sample C Female 15.3
Sample D Female 21.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.7
69736394 Antisense, RP_050503_04_F11, Mouse strain C57BL/6J (56 days, male) 7.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.