MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:63.1 nTPM
HPA:63.1 nTPM
GTEx:48.9 nTPM
FANTOM5:251.5 Scaled Tags Per Million
Pig:50.4 nTPM
Mouse:42.1 nTPM
Allen mouse:8.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 63.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.5
1830 Male, age 51, unknown 62.1
1833 Male, age 53, unknown 55.7
1870 Female, age 42, unknown 54.0
2411 Female, age 72, unknown 53.2
2019 Male, age 18, unknown 47.9
2219 Male, age 76, both hemispheres 44.2
2586 Male, age 75, left hemisphere 44.0
2828 Female, age 72, unknown 42.4
2666 Male, age 74, left hemisphere 41.8
1827 Male, age 72, unknown 39.3
Dorsal raphe nucleus
nTPM: 35.2
2750 Male, age 76, both hemispheres 57.7
2016 Female, age 72, unknown 36.4
1828 Male, age 53, unknown 33.7
2047 Male, age 72, unknown 31.4
2298 Female, age 72, unknown 16.9
Inferior colliculus
nTPM: 36.1
2849 Male, age 72, unknown 42.0
1848 Female, age 42, unknown 40.0
1890 Male, age 53, unknown 35.5
2097 Female, age 72, unknown 27.0
Median raphe nucleus
nTPM: 33.4
2220 Male, age 76, midline 33.4
Pedunculopontine tegmental nucleus
nTPM: 49.3
2338 Male, age 61, both hemispheres 61.8
2334 Male, age 80, both hemispheres 49.5
1921 Female, age 85, both hemispheres 36.7
Periaquaductal grey, anterior
nTPM: 29.4
2502 Female, age 75, unknown 39.0
1947 Male, age 18, unknown 26.4
1795 Male, age 51, unknown 23.0
Periaquaductal grey, dorsal
nTPM: 28.4
2464 Female, age 72, unknown 38.7
1831 Male, age 72, unknown 30.9
2850 Male, age 76, both hemispheres 23.7
1840 Male, age 53, unknown 20.2
Periaquaductal grey, lateral
nTPM: 29.1
2053 Male, age 18, unknown 38.8
2272 Male, age 74, both hemispheres 26.4
2140 Male, age 76, both hemispheres 22.2
Pretectal area
nTPM: 33.5
2407 Male, age 75, both hemispheres 48.1
1815 Male, age 53, unknown 45.0
2316 Male, age 76, right hemisphere 43.3
2825 Male, age 18, unknown 38.9
1817 Female, age 42, unknown 37.2
2007 Male, age 72, unknown 34.1
1944 Female, age 72, unknown 31.0
1816 Male, age 51, unknown 27.0
2273 Male, age 74, both hemispheres 24.6
2224 Female, age 72, unknown 21.6
2667 Female, age 75, unknown 17.5
Red nucleus
nTPM: 63.1
1865 Male, age 51, unknown 79.8
2503 Female, age 72, unknown 71.3
1904 Male, age 53, unknown 71.0
1821 Female, age 72, unknown 65.9
2823 Male, age 76, right hemisphere 64.8
2588 Male, age 74, left hemisphere 64.2
1954 Female, age 42, unknown 62.9
2769 Male, age 72, unknown 61.1
2227 Male, age 72, unknown 60.1
2785 Male, age 18, unknown 57.5
2725 Female, age 75, unknown 52.5
2584 Male, age 75, left hemisphere 45.8
Substantia nigra
nTPM: 33.8
2583 Male, age 75, right hemisphere 49.1
2590 Female, age 75, unknown 45.1
2409 Female, age 72, unknown 38.9
1889 Female, age 72, unknown 36.6
2699 Male, age 18, unknown 32.8
2665 Male, age 74, both hemispheres 31.4
1851 Male, age 51, unknown 31.1
1941 Male, age 53, unknown 28.9
2241 Male, age 72, unknown 24.7
1916 Female, age 42, unknown 19.9
Superior colliculus
nTPM: 45.8
1913 Female, age 42, unknown 65.5
1995 Male, age 72, unknown 60.6
1895 Male, age 76, right hemisphere 52.8
2668 Female, age 75, unknown 50.3
2587 Male, age 74, left hemisphere 49.3
1839 Male, age 51, unknown 44.1
2261 Male, age 18, unknown 35.1
1796 Male, age 53, unknown 35.0
2664 Male, age 75, both hemispheres 34.2
2087 Female, age 72, unknown 31.5
Ventral tegmental area
nTPM: 38.5
2223 Female, age 72, unknown 52.2
2410 Female, age 72, unknown 47.5
2021 Male, age 53, unknown 38.9
1942 Male, age 51, unknown 32.9
2218 Male, age 76, both hemispheres 31.1
1915 Female, age 42, unknown 28.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 48.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.9
Samples: 139

Max nTPM: 139.0
Min nTPM: 11.9
Std nTPM: 23.7
Median nTPM: 45.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 139.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 122.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 120.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 118.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 112.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 106.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 98.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 95.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 91.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 86.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 85.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 251.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 251.5
FF:10158-103A5 76 years, female 251.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 50.4
Pig sample Sample description nTPM
Midbrain
nTPM: 50.4
Samples: 4

Max nTPM: 69.7
Min nTPM: 42.5
Sample A Female 69.7
Sample B Female 44.1
Sample C Male 42.5
Sample D Male 45.2
Periaqueductal gray
nTPM: 40.3
Samples: 3

Max nTPM: 42.0
Min nTPM: 38.8
Sample B Female 42.0
Sample C Male 38.8
Sample D Male 40.1
Substantia nigra
nTPM: 48.4
Samples: 4

Max nTPM: 68.7
Min nTPM: 37.7
Sample A Female 39.1
Sample B Female 37.7
Sample C Male 48.1
Sample D Male 68.7
Superior colliculi
nTPM: 44.3
Samples: 4

Max nTPM: 50.8
Min nTPM: 39.7
Sample A Female 39.7
Sample B Female 44.0
Sample C Male 42.7
Sample D Male 50.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 42.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 42.1
Samples: 4

Max nTPM: 45.5
Min nTPM: 38.1
Sample A Male 38.1
Sample B Male 44.6
Sample C Female 40.3
Sample D Female 45.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.2
69526809 Antisense, RP_050421_01_F10, Mouse strain C57BL/6J (56 days, male) 8.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.