MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:84.1 nTPM
HPA:84.1 nTPM
GTEx:76.1 nTPM
FANTOM5:29.2 Scaled Tags Per Million
Pig:56.5 nTPM
Mouse:163.1 nTPM
Allen mouse:10.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 84.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 81.7
2019 Male, age 18, unknown 86.6
2586 Male, age 75, left hemisphere 85.4
1827 Male, age 72, unknown 83.8
2411 Female, age 72, unknown 83.7
2828 Female, age 72, unknown 81.9
1870 Female, age 42, unknown 81.2
2666 Male, age 74, left hemisphere 80.4
1833 Male, age 53, unknown 78.8
2219 Male, age 76, both hemispheres 77.8
1830 Male, age 51, unknown 77.7
Dorsal raphe nucleus
nTPM: 81.4
2298 Female, age 72, unknown 84.5
2750 Male, age 76, both hemispheres 82.4
1828 Male, age 53, unknown 81.6
2047 Male, age 72, unknown 81.0
2016 Female, age 72, unknown 77.7
Inferior colliculus
nTPM: 80.2
2097 Female, age 72, unknown 83.9
1890 Male, age 53, unknown 81.2
1848 Female, age 42, unknown 79.7
2849 Male, age 72, unknown 76.1
Median raphe nucleus
nTPM: 82.3
2220 Male, age 76, midline 82.3
Pedunculopontine tegmental nucleus
nTPM: 80.8
2338 Male, age 61, both hemispheres 81.7
2334 Male, age 80, both hemispheres 81.0
1921 Female, age 85, both hemispheres 79.8
Periaquaductal grey, anterior
nTPM: 81.9
1795 Male, age 51, unknown 82.6
1947 Male, age 18, unknown 82.2
2502 Female, age 75, unknown 80.9
Periaquaductal grey, dorsal
nTPM: 77.6
1831 Male, age 72, unknown 78.3
2850 Male, age 76, both hemispheres 78.2
2464 Female, age 72, unknown 77.4
1840 Male, age 53, unknown 76.5
Periaquaductal grey, lateral
nTPM: 78.3
2272 Male, age 74, both hemispheres 80.5
2053 Male, age 18, unknown 78.0
2140 Male, age 76, both hemispheres 76.5
Pretectal area
nTPM: 83.8
2007 Male, age 72, unknown 90.5
1817 Female, age 42, unknown 88.9
1816 Male, age 51, unknown 88.6
1944 Female, age 72, unknown 85.6
1815 Male, age 53, unknown 85.1
2667 Female, age 75, unknown 84.7
2273 Male, age 74, both hemispheres 82.6
2407 Male, age 75, both hemispheres 81.5
2224 Female, age 72, unknown 79.1
2316 Male, age 76, right hemisphere 77.8
2825 Male, age 18, unknown 77.6
Red nucleus
nTPM: 84.1
1821 Female, age 72, unknown 90.3
2785 Male, age 18, unknown 87.3
2503 Female, age 72, unknown 86.0
1865 Male, age 51, unknown 85.9
1904 Male, age 53, unknown 85.5
1954 Female, age 42, unknown 83.8
2588 Male, age 74, left hemisphere 83.8
2769 Male, age 72, unknown 83.4
2227 Male, age 72, unknown 82.3
2823 Male, age 76, right hemisphere 81.4
2725 Female, age 75, unknown 80.8
2584 Male, age 75, left hemisphere 78.4
Substantia nigra
nTPM: 82.2
1916 Female, age 42, unknown 88.7
1889 Female, age 72, unknown 85.9
1851 Male, age 51, unknown 85.0
1941 Male, age 53, unknown 84.6
2583 Male, age 75, right hemisphere 81.8
2665 Male, age 74, both hemispheres 81.1
2241 Male, age 72, unknown 80.5
2590 Female, age 75, unknown 79.9
2699 Male, age 18, unknown 79.6
2409 Female, age 72, unknown 75.4
Superior colliculus
nTPM: 81.7
2668 Female, age 75, unknown 87.2
1796 Male, age 53, unknown 84.2
2087 Female, age 72, unknown 82.8
2261 Male, age 18, unknown 82.7
1913 Female, age 42, unknown 81.8
1995 Male, age 72, unknown 81.2
2587 Male, age 74, left hemisphere 80.2
1895 Male, age 76, right hemisphere 79.5
2664 Male, age 75, both hemispheres 79.3
1839 Male, age 51, unknown 78.4
Ventral tegmental area
nTPM: 82.7
2410 Female, age 72, unknown 88.2
1915 Female, age 42, unknown 85.2
2223 Female, age 72, unknown 82.8
2218 Male, age 76, both hemispheres 81.5
1942 Male, age 51, unknown 80.5
2021 Male, age 53, unknown 77.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 76.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 76.1
Samples: 139

Max nTPM: 127.5
Min nTPM: 44.1
Std nTPM: 14.4
Median nTPM: 73.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 127.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 117.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 116.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 112.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 110.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 109.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 108.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 104.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 103.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 103.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 100.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.2
FF:10158-103A5 76 years, female 29.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 56.5
Pig sample Sample description nTPM
Midbrain
nTPM: 55.6
Samples: 4

Max nTPM: 71.5
Min nTPM: 49.3
Sample A Female 71.5
Sample B Female 51.4
Sample C Male 50.2
Sample D Male 49.3
Periaqueductal gray
nTPM: 56.0
Samples: 3

Max nTPM: 66.1
Min nTPM: 47.8
Sample B Female 54.2
Sample C Male 66.1
Sample D Male 47.8
Substantia nigra
nTPM: 54.0
Samples: 4

Max nTPM: 67.1
Min nTPM: 43.7
Sample A Female 67.1
Sample B Female 52.0
Sample C Male 53.1
Sample D Male 43.7
Superior colliculi
nTPM: 56.5
Samples: 4

Max nTPM: 65.8
Min nTPM: 47.5
Sample A Female 65.8
Sample B Female 47.5
Sample C Male 57.8
Sample D Male 54.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 163.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 163.2
Samples: 4

Max nTPM: 183.3
Min nTPM: 146.0
Sample A Male 183.3
Sample B Male 151.3
Sample C Female 146.0
Sample D Female 172.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.1
71608215 Antisense, RP_050927_01_B11, Mouse strain C57BL/6J (56 days, male) 11.2
79556640 Antisense, RP_071204_01_A04, Mouse strain C57BL/6J (56 days, male) 9.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.