BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:5.4 nTPM
HPA:5.4 nTPM
GTEx:3.8 nTPM
FANTOM5:42.4 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA040654Antibody HPA041460
Glial cells LowNot detected
Neuronal cells MediumMedium





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 4.7
1854 Male, age 80, left hemisphere 5.6
2289 Male, age 61, right hemisphere 5.5
1857 Female, age 85, left hemisphere 5.4
2846 Female, age 79, unknown 5.4
2290 Female, age 72, unknown 5.2
2288 Male, age 75, left hemisphere 4.8
1781 Male, age 74, unknown 3.8
2481 Female, age 94, left hemisphere 2.2
Claustrum
nTPM: 3.8
2284 Female, age 91, both hemispheres 4.6
2392 Female, age 94, both hemispheres 4.6
2645 Female, age 72, unknown 4.5
2491 Male, age 75, both hemispheres 4.4
2568 Male, age 61, both hemispheres 4.4
1956 Male, age 74, unknown 3.5
2198 Male, age 80, both hemispheres 3.4
2196 Female, age 79, unknown 3.2
2292 Female, age 85, both hemispheres 1.7
Globus pallidus, externus
nTPM: 1.7
2646 Male, age 61, right hemisphere 2.7
2567 Female, age 72, unknown 2.0
1996 Male, age 80, right hemisphere 1.4
2395 Male, age 75, both hemispheres 1.3
2772 Female, age 79, unknown 1.2
Globus pallidus, internus
nTPM: 1.7
2778 Female, age 91, both hemispheres 2.6
2111 Female, age 85, right hemisphere 2.5
1818 Male, age 74, unknown 1.8
2287 Male, age 75, right hemisphere 1.4
2566 Female, age 72, unknown 1.4
2483 Female, age 94, right hemisphere 1.3
2037 Male, age 80, right hemisphere 1.0
Nucleus accumbens
nTPM: 4.9
1856 Female, age 91, right hemisphere 7.0
2824 Male, age 61, right hemisphere 7.0
1806 Female, age 85, left hemisphere 5.9
1783 Male, age 74, unknown 4.6
2286 Male, age 75, left hemisphere 4.5
2732 Male, age 80, right hemisphere 3.8
2698 Female, age 72, unknown 3.2
2391 Female, age 94, left hemisphere 2.9
Nucleus basalis of Meynert
nTPM: 4.9
2393 Male, age 80, right hemisphere 6.0
2484 Female, age 94, left hemisphere 5.2
2821 Male, age 75, both hemispheres 4.7
2569 Male, age 61, both hemispheres 3.6
Nucleus of the diagonal band
nTPM: 4.2
2029 Male, age 61, right hemisphere 5.9
2775 Male, age 80, right hemisphere 4.0
1979 Male, age 74, unknown 3.9
2195 Female, age 85, both hemispheres 3.7
1812 Female, age 91, both hemispheres 3.6
Olfactory tubercle
nTPM: 5.4
2856 Male, age 75, right hemisphere 6.5
2487 Female, age 94, left hemisphere 6.1
1846 Male, age 80, right hemisphere 4.5
1998 Female, age 91, both hemispheres 4.2
Putamen
nTPM: 5.1
1838 Male, age 80, right hemisphere 7.7
2647 Male, age 75, left hemisphere 6.4
1829 Male, age 74, unknown 4.7
2466 Female, age 79, unknown 4.7
1937 Female, age 91, right hemisphere 4.4
2482 Female, age 94, left hemisphere 4.2
2489 Female, age 72, unknown 3.7
Septal nuclei
nTPM: 3.6
2031 Female, age 72, unknown 4.3
1960 Male, age 74, unknown 4.1
2009 Female, age 91, both hemispheres 4.1
2629 Female, age 94, right hemisphere 3.7
2059 Female, age 85, both hemispheres 3.1
2394 Male, age 61, left hemisphere 3.1
2199 Male, age 80, right hemisphere 2.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 3.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3.4
Samples: 246

Max nTPM: 8.1
Min nTPM: 1.1
Std nTPM: 1.0
Median nTPM: 3.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 8.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 7.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 6.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 6.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 6.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 5.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 5.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 5.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 5.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 5.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 5.2
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 3.8
Samples: 246

Max nTPM: 7.1
Min nTPM: 1.3
Std nTPM: 1.1
Median nTPM: 3.8
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 7.1
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 6.5
GTEX-14LZ3-0011-R6a-SM-D3L8C 60-69 years, female 6.5
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 6.4
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 6.3
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 6.2
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 6.2
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 6.0
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 5.9
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 5.9
GTEX-1I1GV-0011-R6b-SM-ARU6Q 60-69 years, male 5.9
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 2.9
Samples: 205

Max nTPM: 7.2
Min nTPM: 1.0
Std nTPM: 0.8
Median nTPM: 2.8
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 7.2
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 6.2
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 5.7
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 5.1
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 5.0
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 5.0
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 4.7
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 4.6
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 4.4
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 4.4
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 4.2
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 40.7
FF:10164-103B2 76 years, female 40.7
Globus pallidus
Scaled Tags Per Million: 19.8
FF:10161-103A8 76 years, female 20.0
FF:10175-103C4 60 years, female 19.7
Nucleus accumbens
Scaled Tags Per Million: 20.8
FF:10037-101F1 23-56 years, mixed 20.8
Putamen
Scaled Tags Per Million: 42.4
FF:10176-103C5 60 years, female 42.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.