MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:26.0 nTPM
HPA:26.0 nTPM
GTEx:34.1 nTPM
FANTOM5:60.5 Scaled Tags Per Million
Pig:22.4 nTPM
Mouse:20.7 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.5
2586 Male, age 75, left hemisphere 25.1
2019 Male, age 18, unknown 23.4
1827 Male, age 72, unknown 22.1
2828 Female, age 72, unknown 21.4
1870 Female, age 42, unknown 21.2
2666 Male, age 74, left hemisphere 21.2
2411 Female, age 72, unknown 21.1
2219 Male, age 76, both hemispheres 20.7
1833 Male, age 53, unknown 20.2
1830 Male, age 51, unknown 18.8
Dorsal raphe nucleus
nTPM: 20.8
1828 Male, age 53, unknown 22.5
2047 Male, age 72, unknown 21.8
2750 Male, age 76, both hemispheres 21.6
2298 Female, age 72, unknown 20.6
2016 Female, age 72, unknown 17.7
Inferior colliculus
nTPM: 21.1
1848 Female, age 42, unknown 22.2
1890 Male, age 53, unknown 21.4
2849 Male, age 72, unknown 20.5
2097 Female, age 72, unknown 20.4
Median raphe nucleus
nTPM: 22.6
2220 Male, age 76, midline 22.6
Pedunculopontine tegmental nucleus
nTPM: 21.7
2334 Male, age 80, both hemispheres 23.7
1921 Female, age 85, both hemispheres 21.0
2338 Male, age 61, both hemispheres 20.4
Periaquaductal grey, anterior
nTPM: 20.4
1947 Male, age 18, unknown 21.7
1795 Male, age 51, unknown 20.5
2502 Female, age 75, unknown 18.8
Periaquaductal grey, dorsal
nTPM: 18.6
2850 Male, age 76, both hemispheres 20.7
1840 Male, age 53, unknown 18.4
2464 Female, age 72, unknown 17.8
1831 Male, age 72, unknown 17.3
Periaquaductal grey, lateral
nTPM: 18.7
2140 Male, age 76, both hemispheres 19.0
2053 Male, age 18, unknown 18.9
2272 Male, age 74, both hemispheres 18.3
Pretectal area
nTPM: 22.1
1817 Female, age 42, unknown 25.8
1816 Male, age 51, unknown 25.3
2007 Male, age 72, unknown 24.6
1944 Female, age 72, unknown 24.2
1815 Male, age 53, unknown 22.9
2316 Male, age 76, right hemisphere 22.3
2667 Female, age 75, unknown 21.5
2407 Male, age 75, both hemispheres 20.3
2825 Male, age 18, unknown 18.9
2224 Female, age 72, unknown 18.8
2273 Male, age 74, both hemispheres 18.3
Red nucleus
nTPM: 22.9
1821 Female, age 72, unknown 25.1
1865 Male, age 51, unknown 23.9
2588 Male, age 74, left hemisphere 23.7
2503 Female, age 72, unknown 23.4
2725 Female, age 75, unknown 23.1
1954 Female, age 42, unknown 22.9
2769 Male, age 72, unknown 22.4
2823 Male, age 76, right hemisphere 22.4
2785 Male, age 18, unknown 22.2
2584 Male, age 75, left hemisphere 21.8
1904 Male, age 53, unknown 21.7
2227 Male, age 72, unknown 21.7
Substantia nigra
nTPM: 26.0
1916 Female, age 42, unknown 34.5
1851 Male, age 51, unknown 29.6
2241 Male, age 72, unknown 29.4
1941 Male, age 53, unknown 28.0
1889 Female, age 72, unknown 27.1
2699 Male, age 18, unknown 25.4
2665 Male, age 74, both hemispheres 23.1
2590 Female, age 75, unknown 22.2
2583 Male, age 75, right hemisphere 20.9
2409 Female, age 72, unknown 19.4
Superior colliculus
nTPM: 20.9
2668 Female, age 75, unknown 25.8
2087 Female, age 72, unknown 23.3
1895 Male, age 76, right hemisphere 22.9
2261 Male, age 18, unknown 21.1
1796 Male, age 53, unknown 21.0
2587 Male, age 74, left hemisphere 20.8
1913 Female, age 42, unknown 19.6
1839 Male, age 51, unknown 19.5
1995 Male, age 72, unknown 17.8
2664 Male, age 75, both hemispheres 17.3
Ventral tegmental area
nTPM: 23.8
2410 Female, age 72, unknown 27.3
2218 Male, age 76, both hemispheres 27.2
1915 Female, age 42, unknown 25.0
2223 Female, age 72, unknown 22.4
2021 Male, age 53, unknown 20.6
1942 Male, age 51, unknown 20.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 34.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.1
Samples: 139

Max nTPM: 65.0
Min nTPM: 18.3
Std nTPM: 9.2
Median nTPM: 33.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 65.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 64.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 62.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 61.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 59.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 54.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 52.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 52.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 52.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 50.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 50.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 60.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 60.5
FF:10158-103A5 76 years, female 60.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.4
Pig sample Sample description nTPM
Midbrain
nTPM: 22.3
Samples: 4

Max nTPM: 25.7
Min nTPM: 18.4
Sample A Female 25.3
Sample B Female 19.8
Sample C Male 25.7
Sample D Male 18.4
Periaqueductal gray
nTPM: 18.3
Samples: 3

Max nTPM: 19.8
Min nTPM: 15.4
Sample B Female 19.7
Sample C Male 19.8
Sample D Male 15.4
Substantia nigra
nTPM: 21.1
Samples: 4

Max nTPM: 24.0
Min nTPM: 17.9
Sample A Female 24.0
Sample B Female 19.5
Sample C Male 22.8
Sample D Male 17.9
Superior colliculi
nTPM: 22.4
Samples: 4

Max nTPM: 24.5
Min nTPM: 20.8
Sample A Female 24.5
Sample B Female 21.4
Sample C Male 22.8
Sample D Male 20.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.7
Samples: 4

Max nTPM: 22.8
Min nTPM: 18.5
Sample A Male 18.5
Sample B Male 20.4
Sample C Female 22.8
Sample D Female 21.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
71610814 Antisense, RP_050927_01_H04, Mouse strain C57BL/6J (56 days, male) 1.1
74273117 Antisense, RP_050927_01_H04, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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