BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:48.4 nTPM
HPA:48.4 nTPM
GTEx:38.3 nTPM
FANTOM5:120.6 Scaled Tags Per Million
Pig:15.0 nTPM
Mouse:30.2 nTPM
Allen mouse:0.8 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 48.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 36.3
2288 Male, age 75, left hemisphere 43.5
2481 Female, age 94, left hemisphere 40.9
1781 Male, age 74, unknown 36.2
1854 Male, age 80, left hemisphere 35.4
2289 Male, age 61, right hemisphere 35.4
2290 Female, age 72, unknown 34.4
1857 Female, age 85, left hemisphere 32.6
2846 Female, age 79, unknown 32.3
Claustrum
nTPM: 34.9
1956 Male, age 74, unknown 38.7
2491 Male, age 75, both hemispheres 35.6
2198 Male, age 80, both hemispheres 35.3
2392 Female, age 94, both hemispheres 34.8
2284 Female, age 91, both hemispheres 34.3
2196 Female, age 79, unknown 34.1
2292 Female, age 85, both hemispheres 33.8
2568 Male, age 61, both hemispheres 33.7
2645 Female, age 72, unknown 33.5
Globus pallidus, externus
nTPM: 46.2
1996 Male, age 80, right hemisphere 54.4
2772 Female, age 79, unknown 50.5
2395 Male, age 75, both hemispheres 47.0
2646 Male, age 61, right hemisphere 39.9
2567 Female, age 72, unknown 39.2
Globus pallidus, internus
nTPM: 48.4
2111 Female, age 85, right hemisphere 54.5
2287 Male, age 75, right hemisphere 51.8
2778 Female, age 91, both hemispheres 51.1
2037 Male, age 80, right hemisphere 48.5
1818 Male, age 74, unknown 48.0
2483 Female, age 94, right hemisphere 42.6
2566 Female, age 72, unknown 42.1
Nucleus accumbens
nTPM: 36.7
2286 Male, age 75, left hemisphere 43.7
2391 Female, age 94, left hemisphere 41.4
2732 Male, age 80, right hemisphere 40.2
2698 Female, age 72, unknown 36.5
1806 Female, age 85, left hemisphere 33.5
1856 Female, age 91, right hemisphere 33.1
2824 Male, age 61, right hemisphere 33.0
1783 Male, age 74, unknown 32.0
Nucleus basalis of Meynert
nTPM: 38.0
2569 Male, age 61, both hemispheres 40.5
2821 Male, age 75, both hemispheres 37.7
2393 Male, age 80, right hemisphere 37.1
2484 Female, age 94, left hemisphere 36.7
Nucleus of the diagonal band
nTPM: 37.5
2775 Male, age 80, right hemisphere 39.7
1812 Female, age 91, both hemispheres 39.3
2029 Male, age 61, right hemisphere 39.1
1979 Male, age 74, unknown 34.8
2195 Female, age 85, both hemispheres 34.6
Olfactory tubercle
nTPM: 35.7
1846 Male, age 80, right hemisphere 36.3
2487 Female, age 94, left hemisphere 36.2
1998 Female, age 91, both hemispheres 35.4
2856 Male, age 75, right hemisphere 34.8
Putamen
nTPM: 36.1
2647 Male, age 75, left hemisphere 41.9
2482 Female, age 94, left hemisphere 39.7
1829 Male, age 74, unknown 37.1
1937 Female, age 91, right hemisphere 35.0
2489 Female, age 72, unknown 33.7
1838 Male, age 80, right hemisphere 33.2
2466 Female, age 79, unknown 32.2
Septal nuclei
nTPM: 36.9
2009 Female, age 91, both hemispheres 39.0
2199 Male, age 80, right hemisphere 38.0
2629 Female, age 94, right hemisphere 37.9
2031 Female, age 72, unknown 37.3
2059 Female, age 85, both hemispheres 35.8
1960 Male, age 74, unknown 35.3
2394 Male, age 61, left hemisphere 35.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 38.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 35.9
Samples: 246

Max nTPM: 62.9
Min nTPM: 17.7
Std nTPM: 8.6
Median nTPM: 34.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 62.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 61.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 59.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 58.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 58.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 57.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 56.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 56.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 55.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 55.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 54.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 28.9
Samples: 246

Max nTPM: 69.5
Min nTPM: 14.7
Std nTPM: 8.3
Median nTPM: 27.2
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 69.5
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 66.7
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 64.4
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 55.0
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 50.0
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 49.6
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 46.7
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 46.4
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 45.2
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 45.0
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 44.1
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Brain - Putamen (basal ganglia)
Average nTPM: 38.3
Samples: 205

Max nTPM: 71.8
Min nTPM: 18.7
Std nTPM: 9.8
Median nTPM: 36.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 71.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 67.7
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 67.2
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 66.0
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 64.0
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 63.2
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 62.0
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 61.6
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 61.4
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 60.6
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 59.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 120.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 51.0
FF:10164-103B2 76 years, female 51.0
Globus pallidus
Scaled Tags Per Million: 120.6
FF:10175-103C4 60 years, female 147.6
FF:10161-103A8 76 years, female 93.7
Nucleus accumbens
Scaled Tags Per Million: 56.3
FF:10037-101F1 23-56 years, mixed 56.3
Putamen
Scaled Tags Per Million: 52.5
FF:10176-103C5 60 years, female 52.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 15.0
Pig sample Sample description nTPM
Caudate
nTPM: 13.7
Samples: 4

Max nTPM: 15.7
Min nTPM: 12.4
Sample A Female 12.7
Sample B Female 13.8
Sample C Male 15.7
Sample D Male 12.4
Putamen
nTPM: 15.0
Samples: 4

Max nTPM: 17.6
Min nTPM: 12.2
Sample A Female 16.8
Sample B Female 13.4
Sample C Male 17.6
Sample D Male 12.2
Septum
nTPM: 12.7
Samples: 4

Max nTPM: 13.5
Min nTPM: 11.5
Sample A Female 12.8
Sample B Female 13.5
Sample C Male 12.9
Sample D Male 11.5
Ventral pallidum
nTPM: 14.1
Samples: 4

Max nTPM: 17.2
Min nTPM: 9.7
Sample A Female 12.4
Sample B Female 17.2
Sample C Male 17.0
Sample D Male 9.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 30.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 28.2
Samples: 4

Max nTPM: 32.3
Min nTPM: 24.3
Sample A Male 32.3
Sample B Male 27.9
Sample C Female 28.3
Sample D Female 24.3
Septum
nTPM: 28.2
Samples: 4

Max nTPM: 30.3
Min nTPM: 26.9
Sample A Male 26.9
Sample B Male 30.3
Sample C Female 27.6
Sample D Female 28.0
Ventral forebrain
nTPM: 30.3
Samples: 4

Max nTPM: 30.9
Min nTPM: 29.2
Sample A Male 30.9
Sample B Male 30.4
Sample C Female 29.2
Sample D Female 30.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.5
68269060 Antisense, RP_041208_01_G11, Mouse strain C57BL/6J (56 days, male) 0.5
Pallidum
Expression energy: 0.8
68269060 Antisense, RP_041208_01_G11, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

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