MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:43.0 nTPM
HPA:43.0 nTPM
GTEx:42.0 nTPM
FANTOM5:88.9 Scaled Tags Per Million
Pig:50.6 nTPM
Mouse:71.2 nTPM
Allen mouse:3.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.8
2586 Male, age 75, left hemisphere 43.3
1827 Male, age 72, unknown 42.7
2411 Female, age 72, unknown 42.0
2019 Male, age 18, unknown 41.8
2828 Female, age 72, unknown 41.3
2219 Male, age 76, both hemispheres 40.3
1870 Female, age 42, unknown 39.8
2666 Male, age 74, left hemisphere 39.8
1833 Male, age 53, unknown 39.1
1830 Male, age 51, unknown 37.8
Dorsal raphe nucleus
nTPM: 41.8
2298 Female, age 72, unknown 45.2
2047 Male, age 72, unknown 43.0
2750 Male, age 76, both hemispheres 42.6
1828 Male, age 53, unknown 40.7
2016 Female, age 72, unknown 37.4
Inferior colliculus
nTPM: 39.5
2097 Female, age 72, unknown 41.0
1848 Female, age 42, unknown 40.0
1890 Male, age 53, unknown 38.8
2849 Male, age 72, unknown 38.4
Median raphe nucleus
nTPM: 41.4
2220 Male, age 76, midline 41.4
Pedunculopontine tegmental nucleus
nTPM: 40.3
2334 Male, age 80, both hemispheres 43.4
1921 Female, age 85, both hemispheres 41.7
2338 Male, age 61, both hemispheres 35.9
Periaquaductal grey, anterior
nTPM: 41.1
1947 Male, age 18, unknown 43.4
1795 Male, age 51, unknown 42.1
2502 Female, age 75, unknown 37.8
Periaquaductal grey, dorsal
nTPM: 37.2
1840 Male, age 53, unknown 38.1
1831 Male, age 72, unknown 37.4
2850 Male, age 76, both hemispheres 36.8
2464 Female, age 72, unknown 36.4
Periaquaductal grey, lateral
nTPM: 37.4
2272 Male, age 74, both hemispheres 40.6
2053 Male, age 18, unknown 36.3
2140 Male, age 76, both hemispheres 35.2
Pretectal area
nTPM: 43.0
1817 Female, age 42, unknown 47.3
2007 Male, age 72, unknown 47.0
1816 Male, age 51, unknown 46.2
2667 Female, age 75, unknown 45.5
1944 Female, age 72, unknown 44.4
1815 Male, age 53, unknown 42.5
2273 Male, age 74, both hemispheres 42.4
2224 Female, age 72, unknown 41.5
2407 Male, age 75, both hemispheres 41.1
2825 Male, age 18, unknown 38.5
2316 Male, age 76, right hemisphere 36.9
Red nucleus
nTPM: 39.3
2725 Female, age 75, unknown 43.3
1821 Female, age 72, unknown 41.2
2785 Male, age 18, unknown 41.1
2584 Male, age 75, left hemisphere 39.4
2227 Male, age 72, unknown 39.3
2503 Female, age 72, unknown 39.2
1865 Male, age 51, unknown 38.8
2769 Male, age 72, unknown 38.4
1904 Male, age 53, unknown 38.2
1954 Female, age 42, unknown 38.1
2588 Male, age 74, left hemisphere 37.2
2823 Male, age 76, right hemisphere 37.1
Substantia nigra
nTPM: 41.7
1916 Female, age 42, unknown 50.3
1889 Female, age 72, unknown 45.8
1851 Male, age 51, unknown 45.1
1941 Male, age 53, unknown 45.0
2583 Male, age 75, right hemisphere 40.7
2241 Male, age 72, unknown 39.6
2699 Male, age 18, unknown 39.5
2665 Male, age 74, both hemispheres 38.8
2590 Female, age 75, unknown 37.0
2409 Female, age 72, unknown 35.5
Superior colliculus
nTPM: 40.7
1796 Male, age 53, unknown 44.8
2087 Female, age 72, unknown 43.0
2261 Male, age 18, unknown 42.8
2668 Female, age 75, unknown 42.3
1895 Male, age 76, right hemisphere 40.8
2587 Male, age 74, left hemisphere 40.0
1839 Male, age 51, unknown 38.8
1913 Female, age 42, unknown 38.8
2664 Male, age 75, both hemispheres 37.8
1995 Male, age 72, unknown 37.6
Ventral tegmental area
nTPM: 42.2
2410 Female, age 72, unknown 45.6
1915 Female, age 42, unknown 44.5
2218 Male, age 76, both hemispheres 44.5
1942 Male, age 51, unknown 40.1
2223 Female, age 72, unknown 40.0
2021 Male, age 53, unknown 38.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.0
Samples: 139

Max nTPM: 78.2
Min nTPM: 24.7
Std nTPM: 9.6
Median nTPM: 41.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 78.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 75.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 63.2
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 60.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 59.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 59.3
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 58.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 58.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 58.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 57.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 56.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 88.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 88.9
FF:10158-103A5 76 years, female 88.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 50.6
Pig sample Sample description nTPM
Midbrain
nTPM: 48.3
Samples: 4

Max nTPM: 52.4
Min nTPM: 41.5
Sample A Female 52.4
Sample B Female 41.5
Sample C Male 50.8
Sample D Male 48.5
Periaqueductal gray
nTPM: 37.4
Samples: 3

Max nTPM: 41.3
Min nTPM: 34.7
Sample B Female 36.2
Sample C Male 41.3
Sample D Male 34.7
Substantia nigra
nTPM: 44.6
Samples: 4

Max nTPM: 56.5
Min nTPM: 37.1
Sample A Female 56.5
Sample B Female 37.2
Sample C Male 47.4
Sample D Male 37.1
Superior colliculi
nTPM: 50.6
Samples: 4

Max nTPM: 57.4
Min nTPM: 41.2
Sample A Female 57.4
Sample B Female 41.2
Sample C Male 54.4
Sample D Male 49.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 71.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 71.2
Samples: 4

Max nTPM: 75.2
Min nTPM: 66.6
Sample A Male 75.2
Sample B Male 66.6
Sample C Female 69.8
Sample D Female 73.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.9
393258 Antisense, RP_040809_01_A10, Mouse strain C57BL/6J (56 days, male) 3.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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