MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:904.6 nTPM
HPA:904.6 nTPM
GTEx:1134.8 nTPM
FANTOM5:495.6 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 904.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 825.3
1830 Male, age 51, unknown 863.9
2666 Male, age 74, left hemisphere 861.3
2411 Female, age 72, unknown 857.2
1833 Male, age 53, unknown 857.1
1870 Female, age 42, unknown 842.2
2019 Male, age 18, unknown 834.8
2828 Female, age 72, unknown 808.5
2586 Male, age 75, left hemisphere 797.1
2219 Male, age 76, both hemispheres 766.1
1827 Male, age 72, unknown 764.9
Dorsal raphe nucleus
nTPM: 729.0
2750 Male, age 76, both hemispheres 812.2
2016 Female, age 72, unknown 746.0
1828 Male, age 53, unknown 739.0
2047 Male, age 72, unknown 680.7
2298 Female, age 72, unknown 667.0
Inferior colliculus
nTPM: 739.8
1848 Female, age 42, unknown 766.9
2849 Male, age 72, unknown 763.7
1890 Male, age 53, unknown 738.2
2097 Female, age 72, unknown 690.5
Median raphe nucleus
nTPM: 677.8
2220 Male, age 76, midline 677.8
Pedunculopontine tegmental nucleus
nTPM: 773.3
2334 Male, age 80, both hemispheres 793.4
1921 Female, age 85, both hemispheres 771.9
2338 Male, age 61, both hemispheres 754.5
Periaquaductal grey, anterior
nTPM: 721.2
1947 Male, age 18, unknown 739.7
2502 Female, age 75, unknown 729.6
1795 Male, age 51, unknown 694.4
Periaquaductal grey, dorsal
nTPM: 693.2
2464 Female, age 72, unknown 755.7
1831 Male, age 72, unknown 700.5
1840 Male, age 53, unknown 659.5
2850 Male, age 76, both hemispheres 657.2
Periaquaductal grey, lateral
nTPM: 683.3
2053 Male, age 18, unknown 715.4
2272 Male, age 74, both hemispheres 691.9
2140 Male, age 76, both hemispheres 642.7
Pretectal area
nTPM: 751.9
1815 Male, age 53, unknown 826.7
1817 Female, age 42, unknown 799.2
2316 Male, age 76, right hemisphere 787.2
2007 Male, age 72, unknown 780.9
2407 Male, age 75, both hemispheres 759.8
2667 Female, age 75, unknown 751.1
2825 Male, age 18, unknown 733.4
1944 Female, age 72, unknown 728.3
1816 Male, age 51, unknown 726.6
2273 Male, age 74, both hemispheres 692.7
2224 Female, age 72, unknown 685.2
Red nucleus
nTPM: 904.6
2503 Female, age 72, unknown 971.4
2588 Male, age 74, left hemisphere 951.8
1865 Male, age 51, unknown 948.2
1904 Male, age 53, unknown 943.8
2823 Male, age 76, right hemisphere 927.6
1821 Female, age 72, unknown 924.5
2769 Male, age 72, unknown 905.5
2227 Male, age 72, unknown 904.6
2785 Male, age 18, unknown 892.9
1954 Female, age 42, unknown 873.2
2725 Female, age 75, unknown 816.2
2584 Male, age 75, left hemisphere 795.8
Substantia nigra
nTPM: 762.5
2409 Female, age 72, unknown 826.2
1889 Female, age 72, unknown 813.1
2590 Female, age 75, unknown 774.8
2583 Male, age 75, right hemisphere 771.6
1851 Male, age 51, unknown 770.0
1941 Male, age 53, unknown 761.1
2665 Male, age 74, both hemispheres 759.4
2699 Male, age 18, unknown 741.2
2241 Male, age 72, unknown 710.9
1916 Female, age 42, unknown 696.4
Superior colliculus
nTPM: 798.1
1995 Male, age 72, unknown 898.5
1913 Female, age 42, unknown 842.9
1895 Male, age 76, right hemisphere 842.7
2587 Male, age 74, left hemisphere 827.0
2668 Female, age 75, unknown 819.6
1839 Male, age 51, unknown 802.4
2261 Male, age 18, unknown 738.7
2664 Male, age 75, both hemispheres 737.3
1796 Male, age 53, unknown 735.9
2087 Female, age 72, unknown 735.6
Ventral tegmental area
nTPM: 749.0
2410 Female, age 72, unknown 841.4
2223 Female, age 72, unknown 775.4
1915 Female, age 42, unknown 736.9
1942 Male, age 51, unknown 729.3
2021 Male, age 53, unknown 711.8
2218 Male, age 76, both hemispheres 699.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1134.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1134.8
Samples: 139

Max nTPM: 3771.4
Min nTPM: 359.1
Std nTPM: 672.2
Median nTPM: 973.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 3771.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 3402.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 3333.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 3308.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 3199.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 3124.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2851.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 2387.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 2372.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 2308.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 2273.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 495.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 495.6
FF:10158-103A5 76 years, female 495.6

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The Human Protein Atlas

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