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SEPTIN4
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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:859.8 nTPM
HPA:859.8 nTPM
FANTOM5:409.0 Scaled Tags Per Million

PONS - HPA Brain RNA-seq
Max nTPM 859.8
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 832.6
2188 Female, age 91, both hemispheres 895.8
2301 Female, age 85, both hemispheres 824.2
2090 Male, age 80, both hemispheres 824.1
1984 Male, age 76, both hemispheres 786.3
Dorsal cochlear nucleus
nTPM: 815.4
2378 Male, age 80, both hemispheres 843.3
2802 Male, age 74, right hemisphere 828.4
2370 Male, age 61, both hemispheres 817.2
2058 Male, age 76, both hemispheres 805.5
2187 Female, age 91, both hemispheres 782.7
Dorsal tegmental nucleus
nTPM: 771.9
2083 Male, age 80, both hemispheres 859.2
2326 Male, age 74, both hemispheres 782.0
1936 Male, age 76, left hemisphere 731.1
2358 Male, age 61, both hemispheres 715.4
Dorsolateral tegmental area
nTPM: 768.1
2654 Male, age 80, both hemispheres 873.2
2751 Female, age 85, both hemispheres 822.4
2337 Male, age 61, both hemispheres 751.8
2360 Male, age 74, both hemispheres 707.4
2141 Male, age 76, both hemispheres 685.9
Kolliker-Fuse nucleus
nTPM: 827.0
2793 Female, age 91, left hemisphere 936.3
2163 Male, age 80, both hemispheres 810.7
2315 Male, age 76, right hemisphere 734.0
Lateral lemniscal nuclei
nTPM: 832.6
2169 Male, age 76, both hemispheres 885.7
2036 Male, age 80, both hemispheres 851.8
2320 Female, age 91, left hemisphere 845.0
2746 Female, age 85, left hemisphere 806.5
2453 Male, age 74, right hemisphere 773.9
Lateral parabrachial nucleus
nTPM: 825.2
2792 Male, age 76, both hemispheres 914.2
2013 Male, age 80, both hemispheres 836.4
2139 Female, age 85, right hemisphere 804.4
2790 Male, age 61, both hemispheres 745.9
Lateral vestibular nucleus
nTPM: 799.5
2311 Male, age 80, both hemispheres 810.6
2184 Male, age 76, both hemispheres 788.5
Locus coeruleus
nTPM: 692.4
2720 Male, age 74, both hemispheres 746.3
2162 Male, age 80, both hemispheres 733.2
2317 Female, age 72, unknown 688.3
2123 Female, age 91, both hemispheres 679.1
2014 Male, age 55, unknown 675.3
2788 Male, age 74, unknown 670.8
1980 Male, age 76, both hemispheres 654.1
Medial olivary nucleus
nTPM: 798.9
1943 Male, age 61, both hemispheres 827.9
2851 Male, age 80, both hemispheres 821.1
1962 Male, age 76, both hemispheres 773.9
2138 Female, age 91, both hemispheres 772.6
Medial parabrachial nucleus
nTPM: 798.0
2463 Female, age 85, right hemisphere 846.8
2854 Male, age 80, both hemispheres 825.2
2170 Female, age 91, both hemispheres 784.4
2786 Male, age 76, both hemispheres 771.8
2156 Male, age 61, both hemispheres 761.7
Medial periolivary nuclei
nTPM: 796.4
2063 Male, age 76, both hemispheres 847.6
2081 Male, age 80, both hemispheres 820.5
2458 Female, age 91, both hemispheres 803.5
2171 Female, age 85, both hemispheres 780.3
2791 Male, age 74, right hemisphere 730.0
Motor facial nucleus
nTPM: 817.5
2697 Female, age 85, both hemispheres 910.5
2062 Male, age 76, both hemispheres 845.4
2126 Male, age 61, both hemispheres 807.1
2795 Female, age 91, both hemispheres 791.3
2327 Male, age 80, both hemispheres 788.7
2365 Male, age 74, right hemisphere 761.8
Motor trigeminal nucleus
nTPM: 792.3
2079 Male, age 80, both hemispheres 829.0
2560 Male, age 74, both hemispheres 801.3
2321 Female, age 91, both hemispheres 782.4
2309 Male, age 76, both hemispheres 781.2
2335 Male, age 61, both hemispheres 767.6
Nuclei of the trapezoid body
nTPM: 814.3
2159 Male, age 61, both hemispheres 866.7
2166 Male, age 80, both hemispheres 840.3
1983 Male, age 76, both hemispheres 825.4
2368 Female, age 91, both hemispheres 794.0
2735 Female, age 85, both hemispheres 745.2
Paramedian reticular nucleus
nTPM: 792.5
2050 Female, age 85, both hemispheres 812.5
2057 Male, age 80, both hemispheres 807.4
2052 Male, age 76, both hemispheres 779.6
2313 Male, age 61, both hemispheres 770.4
Pontine nuclei
nTPM: 837.6
1863 Male, age 55, unknown 885.7
1968 Male, age 76, left hemisphere 865.4
2319 Female, age 91, both hemispheres 861.0
2109 Female, age 72, unknown 830.9
2787 Female, age 85, both hemispheres 824.2
2454 Male, age 74, left hemisphere 820.2
2115 Male, age 80, left hemisphere 819.4
2727 Male, age 61, right hemisphere 794.2
Pontine raphe nucleus
nTPM: 758.3
2122 Female, age 85, midline 791.0
2853 Male, age 76, midline 725.6
Posteroventral cochlear nucleus
nTPM: 859.8
2341 Male, age 80, both hemispheres 932.4
2135 Female, age 91, both hemispheres 931.3
2371 Male, age 61, both hemispheres 841.8
2070 Male, age 76, both hemispheres 811.1
2752 Female, age 85, both hemispheres 782.5
Principal sensory trigeminal nucleus
nTPM: 798.5
2367 Female, age 91, left hemisphere 837.1
2158 Male, age 61, both hemispheres 800.5
2008 Male, age 80, left hemisphere 785.2
2324 Male, age 76, both hemispheres 771.3
Reticular pontine nucleus, caudal
nTPM: 835.8
2092 Male, age 76, both hemispheres 868.4
2457 Female, age 91, both hemispheres 859.4
2559 Male, age 74, both hemispheres 811.4
2332 Male, age 80, right hemisphere 804.1
Reticular pontine nucleus, oral
nTPM: 833.4
2366 Female, age 91, both hemispheres 950.2
1939 Male, age 80, both hemispheres 832.2
2012 Female, age 85, both hemispheres 819.1
2167 Male, age 76, both hemispheres 798.8
2361 Male, age 74, both hemispheres 766.8
Reticulotegmental nucleus
nTPM: 792.5
2333 Male, age 80, both hemispheres 816.0
2452 Male, age 74, both hemispheres 813.9
2322 Female, age 91, both hemispheres 795.4
2325 Male, age 76, both hemispheres 744.5
Spinal trigeminal nucleus, oral
nTPM: 787.7
2164 Male, age 80, both hemispheres 812.7
1978 Male, age 76, both hemispheres 793.7
2737 Female, age 85, both hemispheres 756.8
Subcoeruleus area
nTPM: 803.2
2369 Female, age 85, left hemisphere 865.0
2089 Male, age 76, left hemisphere 815.5
1958 Male, age 80, both hemispheres 802.4
2451 Male, age 74, both hemispheres 796.9
2323 Female, age 91, left hemisphere 736.2
Superior olive
nTPM: 830.1
2020 Male, age 76, both hemispheres 922.3
2561 Female, age 91, both hemispheres 829.1
1875 Female, age 85, both hemispheres 828.5
2329 Male, age 80, right hemisphere 828.0
2364 Male, age 74, right hemisphere 742.4
Superior vestibular nucleus
nTPM: 741.0
2015 Male, age 80, both hemispheres 795.0
2061 Male, age 76, both hemispheres 723.9
2383 Male, age 74, both hemispheres 704.1
Ventral periolivary nuclei
nTPM: 816.5
2023 Male, age 76, both hemispheres 899.6
2165 Male, age 80, both hemispheres 823.8
2130 Female, age 85, both hemispheres 775.8
2794 Female, age 91, left hemisphere 766.6
Ventrolateral tegmental area, A5 NE cell group
nTPM: 803.3
1959 Male, age 76, both hemispheres 842.4
2161 Male, age 80, both hemispheres 833.5
2456 Female, age 91, both hemispheres 826.8
2840 Female, age 85, both hemispheres 821.9
2359 Male, age 61, both hemispheres 756.6
2449 Male, age 74, both hemispheres 738.5

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 409.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 336.8
FF:10182-103D2 60 years, female 371.1
FF:10165-103B3 76 years, female 302.4
Pons
Scaled Tags Per Million: 409.0
FF:10033-101E6 18-54 years, mixed 409.0

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