MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:41.1 nTPM
HPA:41.1 nTPM
GTEx:46.7 nTPM
FANTOM5:85.6 Scaled Tags Per Million
Pig:42.8 nTPM
Mouse:28.7 nTPM
Allen mouse:2.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.0
2586 Male, age 75, left hemisphere 49.1
2219 Male, age 76, both hemispheres 46.9
2828 Female, age 72, unknown 43.3
1827 Male, age 72, unknown 39.7
2666 Male, age 74, left hemisphere 32.4
1833 Male, age 53, unknown 31.3
2411 Female, age 72, unknown 30.4
1830 Male, age 51, unknown 28.7
1870 Female, age 42, unknown 26.6
2019 Male, age 18, unknown 21.6
Dorsal raphe nucleus
nTPM: 26.8
2750 Male, age 76, both hemispheres 32.7
1828 Male, age 53, unknown 26.9
2047 Male, age 72, unknown 26.1
2298 Female, age 72, unknown 26.0
2016 Female, age 72, unknown 22.5
Inferior colliculus
nTPM: 26.1
2849 Male, age 72, unknown 27.1
1890 Male, age 53, unknown 26.6
2097 Female, age 72, unknown 25.7
1848 Female, age 42, unknown 25.2
Median raphe nucleus
nTPM: 36.4
2220 Male, age 76, midline 36.4
Pedunculopontine tegmental nucleus
nTPM: 25.4
2334 Male, age 80, both hemispheres 30.8
1921 Female, age 85, both hemispheres 24.9
2338 Male, age 61, both hemispheres 20.6
Periaquaductal grey, anterior
nTPM: 41.1
2502 Female, age 75, unknown 46.8
1795 Male, age 51, unknown 41.3
1947 Male, age 18, unknown 35.0
Periaquaductal grey, dorsal
nTPM: 25.8
1831 Male, age 72, unknown 27.5
2464 Female, age 72, unknown 25.9
2850 Male, age 76, both hemispheres 25.1
1840 Male, age 53, unknown 24.6
Periaquaductal grey, lateral
nTPM: 26.9
2053 Male, age 18, unknown 33.3
2140 Male, age 76, both hemispheres 27.9
2272 Male, age 74, both hemispheres 19.5
Pretectal area
nTPM: 33.1
1816 Male, age 51, unknown 40.1
2667 Female, age 75, unknown 38.9
1815 Male, age 53, unknown 38.4
2825 Male, age 18, unknown 36.2
2407 Male, age 75, both hemispheres 36.1
2007 Male, age 72, unknown 35.0
1944 Female, age 72, unknown 34.9
2316 Male, age 76, right hemisphere 33.9
1817 Female, age 42, unknown 32.0
2224 Female, age 72, unknown 23.8
2273 Male, age 74, both hemispheres 14.3
Red nucleus
nTPM: 34.0
2588 Male, age 74, left hemisphere 46.9
2584 Male, age 75, left hemisphere 44.0
2227 Male, age 72, unknown 38.7
2769 Male, age 72, unknown 38.3
2823 Male, age 76, right hemisphere 38.1
2503 Female, age 72, unknown 33.0
2785 Male, age 18, unknown 31.7
1904 Male, age 53, unknown 30.2
1865 Male, age 51, unknown 29.2
2725 Female, age 75, unknown 28.9
1821 Female, age 72, unknown 24.9
1954 Female, age 42, unknown 24.7
Substantia nigra
nTPM: 38.5
2665 Male, age 74, both hemispheres 61.5
1916 Female, age 42, unknown 45.9
2590 Female, age 75, unknown 40.9
2583 Male, age 75, right hemisphere 40.2
1851 Male, age 51, unknown 39.2
1941 Male, age 53, unknown 37.1
2699 Male, age 18, unknown 36.4
1889 Female, age 72, unknown 31.5
2409 Female, age 72, unknown 28.3
2241 Male, age 72, unknown 23.8
Superior colliculus
nTPM: 32.6
2261 Male, age 18, unknown 45.1
2664 Male, age 75, both hemispheres 42.0
1796 Male, age 53, unknown 39.6
2087 Female, age 72, unknown 35.5
1913 Female, age 42, unknown 33.8
1839 Male, age 51, unknown 28.6
1995 Male, age 72, unknown 27.9
2587 Male, age 74, left hemisphere 25.5
1895 Male, age 76, right hemisphere 24.6
2668 Female, age 75, unknown 23.9
Ventral tegmental area
nTPM: 31.8
2410 Female, age 72, unknown 37.9
1942 Male, age 51, unknown 37.1
1915 Female, age 42, unknown 33.5
2218 Male, age 76, both hemispheres 30.6
2021 Male, age 53, unknown 27.0
2223 Female, age 72, unknown 25.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.7
Samples: 139

Max nTPM: 112.7
Min nTPM: 15.5
Std nTPM: 15.8
Median nTPM: 45.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 112.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 90.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 86.7
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 84.8
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 81.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 78.9
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 75.1
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 73.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 70.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 69.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 69.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 85.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 85.6
FF:10158-103A5 76 years, female 85.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 42.8
Pig sample Sample description nTPM
Midbrain
nTPM: 42.5
Samples: 4

Max nTPM: 53.0
Min nTPM: 36.3
Sample A Female 39.0
Sample B Female 36.3
Sample C Male 53.0
Sample D Male 41.7
Periaqueductal gray
nTPM: 32.4
Samples: 3

Max nTPM: 35.5
Min nTPM: 29.0
Sample B Female 32.7
Sample C Male 35.5
Sample D Male 29.0
Substantia nigra
nTPM: 37.9
Samples: 4

Max nTPM: 44.3
Min nTPM: 31.7
Sample A Female 43.8
Sample B Female 31.7
Sample C Male 44.3
Sample D Male 31.9
Superior colliculi
nTPM: 42.8
Samples: 4

Max nTPM: 48.2
Min nTPM: 36.9
Sample A Female 40.1
Sample B Female 36.9
Sample C Male 46.0
Sample D Male 48.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.7
Samples: 4

Max nTPM: 33.1
Min nTPM: 25.4
Sample A Male 33.1
Sample B Male 26.8
Sample C Female 25.4
Sample D Female 29.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.9
69734965 Antisense, RP_050503_01_G09, Mouse strain C57BL/6J (56 days, male) 2.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.