HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:27.4 nTPM
HPA:27.4 nTPM
GTEx:22.3 nTPM
FANTOM5:75.6 Scaled Tags Per Million
Pig:37.7 nTPM
Mouse:40.2 nTPM
Allen mouse:3.1 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 27.4
Sample id Sample description nTPM
Hippocampus
nTPM: 10.5
1898 Male, age 80, left hemisphere 20.0
1855 Male, age 76, left hemisphere 14.3
2621 Female, age 67, right hemisphere 13.8
2148 Female, age 91, left hemisphere 8.0
1911 Female, age 85, right hemisphere 4.6
2529 Female, age 94, left hemisphere 2.4
Dentate gyrus
nTPM: 14.3
1927 Female, age 91, both hemispheres 24.4
2010 Male, age 76, both hemispheres 21.0
2531 Female, age 67, both hemispheres 19.3
2246 Female, age 85, both hemispheres 13.0
2530 Female, age 94, left hemisphere 7.2
2528 Male, age 74, both hemispheres 1.1
Entorhinal gyrus
nTPM: 8.7
2764 Male, age 80, right hemisphere 15.1
1938 Female, age 85, left hemisphere 12.6
1787 Male, age 76, left hemisphere 11.6
2613 Female, age 94, left hemisphere 6.9
2686 Male, age 75, right hemisphere 5.8
2117 Female, age 91, right hemisphere 0.0
Hippocampus, CA1
nTPM: 21.7
2749 Male, age 80, left hemisphere 47.7
2045 Male, age 76, both hemispheres 28.3
1873 Female, age 85, both hemispheres 20.2
2527 Male, age 74, both hemispheres 6.6
2082 Female, age 91, right hemisphere 5.8
Hippocampus, CA2
nTPM: 10.6
1963 Male, age 80, left hemisphere 33.0
1892 Male, age 76, both hemispheres 22.9
2437 Female, age 94, left hemisphere 6.4
2113 Female, age 91, right hemisphere 1.1
2249 Male, age 74, both hemispheres 0.1
1940 Female, age 85, left hemisphere 0.0
Hippocampus, CA3
nTPM: 16.7
2137 Male, age 80, left hemisphere 37.8
2861 Female, age 67, both hemispheres 21.4
2620 Female, age 94, left hemisphere 19.6
1867 Male, age 76, both hemispheres 12.8
1891 Female, age 85, both hemispheres 8.7
2436 Male, age 74, both hemispheres 0.0
Parahippocampal cortex
nTPM: 13.3
1850 Male, age 80, both hemispheres 32.5
2693 Female, age 94, both hemispheres 21.2
2532 Female, age 72, left hemisphere 20.5
2245 Female, age 91, both hemispheres 13.9
1933 Female, age 85, both hemispheres 13.8
2018 Male, age 76, both hemispheres 12.9
1990 Female, age 91, right hemisphere 7.2
2250 Female, age 67, right hemisphere 4.8
2622 Female, age 67, right hemisphere 4.1
2692 Male, age 74, both hemispheres 2.0
Perirhinal gyrus
nTPM: 27.4
1794 Male, age 80, right hemisphere 36.1
1841 Female, age 85, right hemisphere 33.9
2848 Male, age 76, right hemisphere 28.1
1847 Female, age 91, left hemisphere 20.9
2521 Female, age 94, right hemisphere 17.7
Subiculum
nTPM: 4.2
1901 Male, age 80, both hemispheres 10.8
1977 Female, age 85, both hemispheres 8.9
2729 Female, age 91, right hemisphere 4.9
2619 Male, age 74, both hemispheres 0.8
2042 Male, age 76, both hemispheres 0.0
2438 Female, age 94, left hemisphere 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 22.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 22.3
Samples: 197

Max nTPM: 60.6
Min nTPM: 9.9
Std nTPM: 7.2
Median nTPM: 20.8
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 60.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 50.0
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 48.1
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 45.0
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 42.1
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 41.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 40.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 39.2
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 36.9
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 36.5
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 36.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 75.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 75.6
FF:10153-102I9 76 years, female 76.9
FF:10169-103B7 60 years, female 74.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 37.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 37.7
Samples: 4

Max nTPM: 41.1
Min nTPM: 33.2
Sample A Female 40.2
Sample B Female 41.1
Sample C Male 33.2
Sample D Male 36.1
Entorhinal cortex
nTPM: 35.3
Samples: 4

Max nTPM: 38.4
Min nTPM: 33.4
Sample A Female 38.4
Sample B Female 33.4
Sample C Male 35.9
Sample D Male 33.6
Subiculum
nTPM: 34.0
Samples: 4

Max nTPM: 44.8
Min nTPM: 27.5
Sample A Female 44.8
Sample B Female 31.1
Sample C Male 32.7
Sample D Male 27.5
Ventral hippocampus
nTPM: 34.6
Samples: 4

Max nTPM: 39.2
Min nTPM: 29.8
Sample A Female 32.4
Sample B Female 29.8
Sample C Male 36.8
Sample D Male 39.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 40.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 35.0
Samples: 4

Max nTPM: 43.9
Min nTPM: 30.4
Sample A Male 33.0
Sample B Male 30.4
Sample C Female 32.8
Sample D Female 43.9
Hippocampal formation
nTPM: 40.2
Samples: 4

Max nTPM: 50.7
Min nTPM: 31.4
Sample A Male 31.4
Sample B Male 45.7
Sample C Female 50.7
Sample D Female 33.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.1
70300995 Antisense, RP_050607_02_H07, Mouse strain C57BL/6J (56 days, male) 3.1

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