BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:48.9 nTPM
HPA:48.9 nTPM
GTEx:51.6 nTPM
FANTOM5:45.7 Scaled Tags Per Million
Mouse:18.0 nTPM
Allen mouse:2.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA011947
Glial cells Low
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 48.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 45.7
2289 Male, age 61, right hemisphere 48.2
2846 Female, age 79, unknown 47.4
2290 Female, age 72, unknown 46.2
1781 Male, age 74, unknown 45.7
2481 Female, age 94, left hemisphere 44.9
2288 Male, age 75, left hemisphere 44.8
1857 Female, age 85, left hemisphere 44.3
1854 Male, age 80, left hemisphere 44.2
Claustrum
nTPM: 42.7
2568 Male, age 61, both hemispheres 45.4
2645 Female, age 72, unknown 45.0
2284 Female, age 91, both hemispheres 44.7
2196 Female, age 79, unknown 44.3
2198 Male, age 80, both hemispheres 43.0
2292 Female, age 85, both hemispheres 41.9
2491 Male, age 75, both hemispheres 40.8
1956 Male, age 74, unknown 40.1
2392 Female, age 94, both hemispheres 39.3
Globus pallidus, externus
nTPM: 48.9
2567 Female, age 72, unknown 52.4
2646 Male, age 61, right hemisphere 49.8
2772 Female, age 79, unknown 49.8
1996 Male, age 80, right hemisphere 49.7
2395 Male, age 75, both hemispheres 42.5
Globus pallidus, internus
nTPM: 47.1
2566 Female, age 72, unknown 49.9
1818 Male, age 74, unknown 49.6
2037 Male, age 80, right hemisphere 49.5
2778 Female, age 91, both hemispheres 46.4
2287 Male, age 75, right hemisphere 45.6
2483 Female, age 94, right hemisphere 45.5
2111 Female, age 85, right hemisphere 43.1
Nucleus accumbens
nTPM: 43.6
2824 Male, age 61, right hemisphere 45.4
2698 Female, age 72, unknown 44.4
1806 Female, age 85, left hemisphere 44.0
1783 Male, age 74, unknown 43.7
2286 Male, age 75, left hemisphere 43.5
1856 Female, age 91, right hemisphere 43.2
2391 Female, age 94, left hemisphere 42.7
2732 Male, age 80, right hemisphere 41.9
Nucleus basalis of Meynert
nTPM: 46.1
2569 Male, age 61, both hemispheres 52.6
2484 Female, age 94, left hemisphere 44.9
2821 Male, age 75, both hemispheres 44.0
2393 Male, age 80, right hemisphere 42.9
Nucleus of the diagonal band
nTPM: 40.4
1979 Male, age 74, unknown 42.5
2029 Male, age 61, right hemisphere 40.9
1812 Female, age 91, both hemispheres 40.4
2195 Female, age 85, both hemispheres 39.2
2775 Male, age 80, right hemisphere 39.1
Olfactory tubercle
nTPM: 41.1
2856 Male, age 75, right hemisphere 44.8
1846 Male, age 80, right hemisphere 40.1
1998 Female, age 91, both hemispheres 40.1
2487 Female, age 94, left hemisphere 39.6
Putamen
nTPM: 45.4
2647 Male, age 75, left hemisphere 50.7
2489 Female, age 72, unknown 47.5
1829 Male, age 74, unknown 45.0
2482 Female, age 94, left hemisphere 44.7
1838 Male, age 80, right hemisphere 43.7
2466 Female, age 79, unknown 43.1
1937 Female, age 91, right hemisphere 42.9
Septal nuclei
nTPM: 41.4
2199 Male, age 80, right hemisphere 46.0
2394 Male, age 61, left hemisphere 43.4
2629 Female, age 94, right hemisphere 41.3
2059 Female, age 85, both hemispheres 40.8
1960 Male, age 74, unknown 39.9
2031 Female, age 72, unknown 39.5
2009 Female, age 91, both hemispheres 39.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 51.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 46.9
Samples: 246

Max nTPM: 94.1
Min nTPM: 13.3
Std nTPM: 11.4
Median nTPM: 45.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 94.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 77.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 75.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 73.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 72.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 72.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 71.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 71.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 71.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 70.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 69.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 47.4
Samples: 246

Max nTPM: 109.9
Min nTPM: 20.0
Std nTPM: 16.8
Median nTPM: 44.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 109.9
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 109.2
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 106.7
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 97.5
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 96.8
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 91.7
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 91.2
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 90.4
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 85.8
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 83.9
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 83.6
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Brain - Putamen (basal ganglia)
Average nTPM: 51.6
Samples: 205

Max nTPM: 96.4
Min nTPM: 21.6
Std nTPM: 12.8
Median nTPM: 50.4
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 96.4
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 92.9
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 89.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 87.1
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 83.1
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 80.3
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 79.0
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 75.7
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 74.3
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 73.8
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 73.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 40.1
FF:10164-103B2 76 years, female 40.1
Globus pallidus
Scaled Tags Per Million: 33.2
FF:10161-103A8 76 years, female 33.4
FF:10175-103C4 60 years, female 33.1
Nucleus accumbens
Scaled Tags Per Million: 45.7
FF:10037-101F1 23-56 years, mixed 45.7
Putamen
Scaled Tags Per Million: 40.9
FF:10176-103C5 60 years, female 40.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 18.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 13.4
Samples: 4

Max nTPM: 15.5
Min nTPM: 10.3
Sample A Male 14.6
Sample B Male 15.5
Sample C Female 10.3
Sample D Female 13.2
Septum
nTPM: 18.0
Samples: 4

Max nTPM: 19.0
Min nTPM: 16.9
Sample A Male 16.9
Sample B Male 19.0
Sample C Female 17.6
Sample D Female 18.5
Ventral forebrain
nTPM: 17.2
Samples: 4

Max nTPM: 20.2
Min nTPM: 15.2
Sample A Male 18.2
Sample B Male 15.2
Sample C Female 20.2
Sample D Female 15.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.3
69262343 Antisense, RP_050303_02_C01, Mouse strain C57BL/6J (56 days, male) 2.3
Pallidum
Expression energy: 2.4
69262343 Antisense, RP_050303_02_C01, Mouse strain C57BL/6J (56 days, male) 2.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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