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ST3GAL4
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  • ST3GAL4
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:31.9 nTPM
HPA:31.9 nTPM
GTEx:66.3 nTPM
FANTOM5:43.4 Scaled Tags Per Million
Pig:31.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 31.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 30.2
1981 Female, age 72, midline 33.1
2816 Male, age 47, midline 31.8
2048 Male, age 55, midline 30.4
2194 Female, age 79, both hemispheres 29.0
2565 Male, age 75, midline 26.6
Cervical spinal cord, dorsal horn
nTPM: 30.6
2296 Male, age 66, both hemispheres 45.7
2173 Female, age 72, unknown 37.8
2069 Male, age 47, both hemispheres 29.7
1877 Male, age 55, unknown 27.5
2721 Male, age 90, both hemispheres 22.1
2297 Male, age 75, both hemispheres 21.1
Cervical spinal cord, ventral horn
nTPM: 31.9
2068 Male, age 55, unknown 34.0
2098 Female, age 72, unknown 33.9
2820 Female, age 79, both hemispheres 33.9
2480 Male, age 75, both hemispheres 32.3
2295 Male, age 66, both hemispheres 28.9
2809 Male, age 90, both hemispheres 28.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 66.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 66.3
Samples: 159

Max nTPM: 167.1
Min nTPM: 15.8
Std nTPM: 25.4
Median nTPM: 63.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 167.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 143.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 130.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 119.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 118.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 115.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 114.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 112.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 112.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 111.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 111.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 111.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 108.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 107.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 106.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 104.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 101.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 99.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 96.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 96.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 91.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 91.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 90.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 90.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 89.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 88.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 88.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 86.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 86.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 85.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 84.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 84.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 84.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 84.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 84.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 84.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 84.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 81.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 81.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 80.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 80.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 79.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 79.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 79.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 78.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 77.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 77.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 76.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 75.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 74.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 74.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 74.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 73.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 73.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 73.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 72.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 72.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 72.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 71.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 71.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 71.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 70.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 70.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 70.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 70.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 70.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 69.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 69.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 69.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 69.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 68.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 68.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 68.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 66.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 66.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 65.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 65.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 64.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 63.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 63.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 63.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 61.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 61.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 61.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 60.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 59.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 59.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 58.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 58.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 57.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 57.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 57.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 57.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 57.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 56.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 56.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 56.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 56.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 56.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 55.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 55.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 55.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 54.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 54.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 54.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 54.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 53.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 52.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 52.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 52.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 52.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 52.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 52.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 52.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 51.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 51.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 51.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 50.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 49.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 49.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 49.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 49.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 49.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 49.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 48.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 48.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 45.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 42.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 42.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 42.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 42.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 41.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 41.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 40.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 40.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 39.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 39.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 39.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 39.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 39.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 38.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 36.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 36.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 35.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 35.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 35.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 34.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 34.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 34.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 34.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 31.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 30.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 28.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 27.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 25.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 24.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 22.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 15.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 15.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 43.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 43.4
FF:10181-103D1 60 years, female 57.3
FF:10159-103A6 76 years, female 29.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 31.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 31.2
Samples: 4

Max nTPM: 43.1
Min nTPM: 26.6
Sample A Female 27.4
Sample B Female 27.7
Sample C Male 43.1
Sample D Male 26.6
Ventral spinal cord
nTPM: 31.0
Samples: 4

Max nTPM: 34.7
Min nTPM: 27.6
Sample A Female 30.3
Sample B Female 27.6
Sample C Male 31.2
Sample D Male 34.7

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