MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:15.5 nTPM
HPA:15.5 nTPM
GTEx:24.6 nTPM
FANTOM5:43.6 Scaled Tags Per Million
Pig:15.3 nTPM
Mouse:15.2 nTPM
Allen mouse:5.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 15.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.3
2219 Male, age 76, both hemispheres 22.2
2019 Male, age 18, unknown 20.1
2828 Female, age 72, unknown 13.2
1830 Male, age 51, unknown 12.8
1833 Male, age 53, unknown 11.8
1870 Female, age 42, unknown 10.9
2411 Female, age 72, unknown 10.9
2586 Male, age 75, left hemisphere 10.9
1827 Male, age 72, unknown 10.2
2666 Male, age 74, left hemisphere 10.0
Dorsal raphe nucleus
nTPM: 10.4
2750 Male, age 76, both hemispheres 13.8
2016 Female, age 72, unknown 11.7
1828 Male, age 53, unknown 11.4
2298 Female, age 72, unknown 7.7
2047 Male, age 72, unknown 7.3
Inferior colliculus
nTPM: 11.4
1890 Male, age 53, unknown 13.3
2849 Male, age 72, unknown 11.4
1848 Female, age 42, unknown 11.0
2097 Female, age 72, unknown 9.8
Median raphe nucleus
nTPM: 10.9
2220 Male, age 76, midline 10.9
Pedunculopontine tegmental nucleus
nTPM: 13.5
2338 Male, age 61, both hemispheres 17.1
2334 Male, age 80, both hemispheres 14.5
1921 Female, age 85, both hemispheres 8.9
Periaquaductal grey, anterior
nTPM: 12.2
2502 Female, age 75, unknown 14.7
1947 Male, age 18, unknown 12.1
1795 Male, age 51, unknown 9.7
Periaquaductal grey, dorsal
nTPM: 11.4
1831 Male, age 72, unknown 12.5
2850 Male, age 76, both hemispheres 11.9
2464 Female, age 72, unknown 11.5
1840 Male, age 53, unknown 9.7
Periaquaductal grey, lateral
nTPM: 10.4
2272 Male, age 74, both hemispheres 11.7
2140 Male, age 76, both hemispheres 11.2
2053 Male, age 18, unknown 8.2
Pretectal area
nTPM: 12.7
1817 Female, age 42, unknown 18.9
2007 Male, age 72, unknown 17.2
1815 Male, age 53, unknown 16.8
2316 Male, age 76, right hemisphere 15.0
1944 Female, age 72, unknown 12.8
2667 Female, age 75, unknown 12.8
1816 Male, age 51, unknown 11.3
2407 Male, age 75, both hemispheres 9.8
2273 Male, age 74, both hemispheres 9.3
2224 Female, age 72, unknown 8.2
2825 Male, age 18, unknown 7.8
Red nucleus
nTPM: 15.5
2785 Male, age 18, unknown 19.6
2503 Female, age 72, unknown 18.9
1865 Male, age 51, unknown 17.3
1904 Male, age 53, unknown 15.7
2227 Male, age 72, unknown 15.7
2769 Male, age 72, unknown 15.7
1821 Female, age 72, unknown 15.1
1954 Female, age 42, unknown 14.5
2588 Male, age 74, left hemisphere 14.5
2823 Male, age 76, right hemisphere 14.0
2584 Male, age 75, left hemisphere 12.8
2725 Female, age 75, unknown 12.2
Substantia nigra
nTPM: 14.5
2665 Male, age 74, both hemispheres 21.5
2699 Male, age 18, unknown 18.9
2409 Female, age 72, unknown 15.9
2583 Male, age 75, right hemisphere 15.5
1851 Male, age 51, unknown 14.8
2590 Female, age 75, unknown 13.9
1889 Female, age 72, unknown 12.8
1941 Male, age 53, unknown 11.1
2241 Male, age 72, unknown 11.0
1916 Female, age 42, unknown 9.4
Superior colliculus
nTPM: 11.9
1995 Male, age 72, unknown 15.7
1895 Male, age 76, right hemisphere 14.9
1913 Female, age 42, unknown 14.1
1839 Male, age 51, unknown 12.9
2087 Female, age 72, unknown 11.7
2668 Female, age 75, unknown 11.6
2587 Male, age 74, left hemisphere 11.3
1796 Male, age 53, unknown 10.0
2664 Male, age 75, both hemispheres 8.8
2261 Male, age 18, unknown 8.2
Ventral tegmental area
nTPM: 11.1
2410 Female, age 72, unknown 11.5
1942 Male, age 51, unknown 11.4
2021 Male, age 53, unknown 11.3
2218 Male, age 76, both hemispheres 11.2
2223 Female, age 72, unknown 11.2
1915 Female, age 42, unknown 10.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.6
Samples: 139

Max nTPM: 71.8
Min nTPM: 2.4
Std nTPM: 13.3
Median nTPM: 22.9
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 71.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 68.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 60.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 56.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 54.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 53.8
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 50.7
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 48.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 46.8
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 46.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 46.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.6
FF:10158-103A5 76 years, female 43.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.3
Pig sample Sample description nTPM
Midbrain
nTPM: 11.9
Samples: 4

Max nTPM: 18.1
Min nTPM: 8.9
Sample A Female 18.1
Sample B Female 11.5
Sample C Male 9.0
Sample D Male 8.9
Periaqueductal gray
nTPM: 10.6
Samples: 3

Max nTPM: 11.0
Min nTPM: 9.9
Sample B Female 11.0
Sample C Male 10.8
Sample D Male 9.9
Substantia nigra
nTPM: 15.3
Samples: 4

Max nTPM: 21.5
Min nTPM: 10.3
Sample A Female 13.3
Sample B Female 21.5
Sample C Male 10.3
Sample D Male 16.2
Superior colliculi
nTPM: 13.3
Samples: 4

Max nTPM: 16.3
Min nTPM: 8.5
Sample A Female 15.5
Sample B Female 16.3
Sample C Male 8.5
Sample D Male 12.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.2
Samples: 4

Max nTPM: 17.1
Min nTPM: 12.8
Sample A Male 17.1
Sample B Male 15.4
Sample C Female 12.8
Sample D Female 15.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.8
69540507 Antisense, RP_050426_01_H06, Mouse strain C57BL/6J (56 days, male) 5.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.