MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:213.0 nTPM
HPA:213.0 nTPM
GTEx:187.4 nTPM
FANTOM5:558.9 Scaled Tags Per Million
Pig:217.6 nTPM
Mouse:99.2 nTPM
Allen mouse:7.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 213.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 196.1
1870 Female, age 42, unknown 214.5
2411 Female, age 72, unknown 202.9
2019 Male, age 18, unknown 201.4
1833 Male, age 53, unknown 198.3
1830 Male, age 51, unknown 197.8
1827 Male, age 72, unknown 190.6
2586 Male, age 75, left hemisphere 189.8
2219 Male, age 76, both hemispheres 189.5
2828 Female, age 72, unknown 189.0
2666 Male, age 74, left hemisphere 187.6
Dorsal raphe nucleus
nTPM: 203.6
2298 Female, age 72, unknown 207.6
2047 Male, age 72, unknown 205.6
2750 Male, age 76, both hemispheres 204.8
2016 Female, age 72, unknown 200.9
1828 Male, age 53, unknown 199.3
Inferior colliculus
nTPM: 192.0
2097 Female, age 72, unknown 195.3
1848 Female, age 42, unknown 193.1
1890 Male, age 53, unknown 192.2
2849 Male, age 72, unknown 187.4
Median raphe nucleus
nTPM: 213.0
2220 Male, age 76, midline 213.0
Pedunculopontine tegmental nucleus
nTPM: 208.2
2334 Male, age 80, both hemispheres 214.3
2338 Male, age 61, both hemispheres 207.7
1921 Female, age 85, both hemispheres 202.5
Periaquaductal grey, anterior
nTPM: 195.7
1947 Male, age 18, unknown 201.0
2502 Female, age 75, unknown 197.5
1795 Male, age 51, unknown 188.6
Periaquaductal grey, dorsal
nTPM: 196.5
2850 Male, age 76, both hemispheres 211.6
1840 Male, age 53, unknown 197.5
1831 Male, age 72, unknown 189.1
2464 Female, age 72, unknown 187.8
Periaquaductal grey, lateral
nTPM: 198.7
2272 Male, age 74, both hemispheres 201.4
2140 Male, age 76, both hemispheres 200.1
2053 Male, age 18, unknown 194.7
Pretectal area
nTPM: 196.9
2273 Male, age 74, both hemispheres 207.4
2667 Female, age 75, unknown 204.7
2224 Female, age 72, unknown 203.8
1817 Female, age 42, unknown 197.1
1815 Male, age 53, unknown 195.9
2825 Male, age 18, unknown 195.9
2007 Male, age 72, unknown 193.4
1816 Male, age 51, unknown 193.0
1944 Female, age 72, unknown 192.5
2407 Male, age 75, both hemispheres 192.0
2316 Male, age 76, right hemisphere 190.2
Red nucleus
nTPM: 200.8
1821 Female, age 72, unknown 218.9
1865 Male, age 51, unknown 210.3
1904 Male, age 53, unknown 208.0
2725 Female, age 75, unknown 207.8
1954 Female, age 42, unknown 206.4
2503 Female, age 72, unknown 203.0
2785 Male, age 18, unknown 202.3
2227 Male, age 72, unknown 196.5
2769 Male, age 72, unknown 196.3
2823 Male, age 76, right hemisphere 194.3
2588 Male, age 74, left hemisphere 183.9
2584 Male, age 75, left hemisphere 181.8
Substantia nigra
nTPM: 208.5
2241 Male, age 72, unknown 245.1
1916 Female, age 42, unknown 218.2
2409 Female, age 72, unknown 215.1
1851 Male, age 51, unknown 212.6
1941 Male, age 53, unknown 208.8
1889 Female, age 72, unknown 205.5
2699 Male, age 18, unknown 203.4
2665 Male, age 74, both hemispheres 196.1
2590 Female, age 75, unknown 190.6
2583 Male, age 75, right hemisphere 189.7
Superior colliculus
nTPM: 193.5
2587 Male, age 74, left hemisphere 203.0
1913 Female, age 42, unknown 202.1
1895 Male, age 76, right hemisphere 197.8
1796 Male, age 53, unknown 192.9
2668 Female, age 75, unknown 192.8
1995 Male, age 72, unknown 192.7
1839 Male, age 51, unknown 192.4
2261 Male, age 18, unknown 188.7
2087 Female, age 72, unknown 186.6
2664 Male, age 75, both hemispheres 185.9
Ventral tegmental area
nTPM: 203.7
2223 Female, age 72, unknown 211.5
1915 Female, age 42, unknown 210.7
2410 Female, age 72, unknown 203.3
2218 Male, age 76, both hemispheres 202.1
1942 Male, age 51, unknown 199.5
2021 Male, age 53, unknown 195.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 187.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 187.4
Samples: 139

Max nTPM: 627.7
Min nTPM: 112.9
Std nTPM: 75.0
Median nTPM: 171.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 627.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 551.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 525.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 497.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 326.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 316.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 294.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 278.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 270.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 266.8
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 266.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 558.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 558.9
FF:10158-103A5 76 years, female 558.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 217.6
Pig sample Sample description nTPM
Midbrain
nTPM: 217.6
Samples: 4

Max nTPM: 302.8
Min nTPM: 171.8
Sample A Female 302.8
Sample B Female 209.8
Sample C Male 186.0
Sample D Male 171.8
Periaqueductal gray
nTPM: 195.3
Samples: 3

Max nTPM: 210.0
Min nTPM: 182.7
Sample B Female 182.7
Sample C Male 210.0
Sample D Male 193.2
Substantia nigra
nTPM: 200.0
Samples: 4

Max nTPM: 240.6
Min nTPM: 158.7
Sample A Female 240.6
Sample B Female 158.7
Sample C Male 210.3
Sample D Male 190.2
Superior colliculi
nTPM: 195.1
Samples: 4

Max nTPM: 224.0
Min nTPM: 137.9
Sample A Female 224.0
Sample B Female 137.9
Sample C Male 209.2
Sample D Male 209.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 99.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 99.2
Samples: 4

Max nTPM: 102.0
Min nTPM: 97.1
Sample A Male 99.9
Sample B Male 102.0
Sample C Female 97.7
Sample D Female 97.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.8
75214937 Antisense, RP_060427_01_A04, Mouse strain C57BL/6J (56 days, male) 7.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.