BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:102.3 nTPM
HPA:102.3 nTPM
GTEx:66.7 nTPM
FANTOM5:287.6 Scaled Tags Per Million
Mouse:104.6 nTPM
Allen mouse:9.8 Expression energy

CAUDATE - Antibody stainingi
Antibody CAB010224
Glial cells Medium
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 102.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 89.2
2288 Male, age 75, left hemisphere 99.6
2481 Female, age 94, left hemisphere 93.7
2846 Female, age 79, unknown 90.1
2290 Female, age 72, unknown 89.1
1781 Male, age 74, unknown 88.9
1854 Male, age 80, left hemisphere 86.4
1857 Female, age 85, left hemisphere 83.0
2289 Male, age 61, right hemisphere 82.7
Claustrum
nTPM: 92.1
1956 Male, age 74, unknown 98.2
2198 Male, age 80, both hemispheres 96.9
2196 Female, age 79, unknown 95.8
2491 Male, age 75, both hemispheres 95.1
2392 Female, age 94, both hemispheres 91.8
2568 Male, age 61, both hemispheres 89.9
2292 Female, age 85, both hemispheres 88.9
2645 Female, age 72, unknown 86.3
2284 Female, age 91, both hemispheres 85.8
Globus pallidus, externus
nTPM: 98.0
2772 Female, age 79, unknown 111.0
2646 Male, age 61, right hemisphere 103.3
1996 Male, age 80, right hemisphere 102.2
2395 Male, age 75, both hemispheres 89.8
2567 Female, age 72, unknown 83.6
Globus pallidus, internus
nTPM: 102.3
2287 Male, age 75, right hemisphere 123.5
2778 Female, age 91, both hemispheres 109.7
2111 Female, age 85, right hemisphere 104.7
2483 Female, age 94, right hemisphere 101.2
1818 Male, age 74, unknown 100.4
2037 Male, age 80, right hemisphere 91.5
2566 Female, age 72, unknown 85.0
Nucleus accumbens
nTPM: 91.6
2286 Male, age 75, left hemisphere 101.7
2391 Female, age 94, left hemisphere 94.5
2698 Female, age 72, unknown 93.2
1783 Male, age 74, unknown 92.3
1806 Female, age 85, left hemisphere 89.0
1856 Female, age 91, right hemisphere 88.3
2732 Male, age 80, right hemisphere 87.6
2824 Male, age 61, right hemisphere 86.2
Nucleus basalis of Meynert
nTPM: 88.5
2569 Male, age 61, both hemispheres 102.8
2821 Male, age 75, both hemispheres 85.5
2484 Female, age 94, left hemisphere 83.5
2393 Male, age 80, right hemisphere 82.0
Nucleus of the diagonal band
nTPM: 89.6
1812 Female, age 91, both hemispheres 93.3
2775 Male, age 80, right hemisphere 93.3
2195 Female, age 85, both hemispheres 93.0
1979 Male, age 74, unknown 86.0
2029 Male, age 61, right hemisphere 82.3
Olfactory tubercle
nTPM: 88.5
1846 Male, age 80, right hemisphere 97.6
1998 Female, age 91, both hemispheres 88.2
2487 Female, age 94, left hemisphere 85.8
2856 Male, age 75, right hemisphere 82.5
Putamen
nTPM: 87.7
2482 Female, age 94, left hemisphere 93.8
2466 Female, age 79, unknown 91.8
1937 Female, age 91, right hemisphere 88.4
2647 Male, age 75, left hemisphere 87.4
1829 Male, age 74, unknown 86.6
2489 Female, age 72, unknown 83.8
1838 Male, age 80, right hemisphere 81.7
Septal nuclei
nTPM: 89.0
1960 Male, age 74, unknown 93.4
2031 Female, age 72, unknown 91.3
2629 Female, age 94, right hemisphere 89.3
2059 Female, age 85, both hemispheres 89.0
2394 Male, age 61, left hemisphere 87.7
2199 Male, age 80, right hemisphere 87.1
2009 Female, age 91, both hemispheres 85.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 66.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 66.7
Samples: 246

Max nTPM: 97.2
Min nTPM: 18.7
Std nTPM: 12.5
Median nTPM: 68.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 97.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 96.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 95.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 93.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 92.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 91.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 91.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 90.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 89.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 88.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 87.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 64.3
Samples: 246

Max nTPM: 131.4
Min nTPM: 16.3
Std nTPM: 17.1
Median nTPM: 67.3
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 131.4
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 102.6
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 95.8
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 93.9
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 93.2
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 90.7
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 89.3
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 88.6
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 88.4
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 88.1
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 87.4
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Brain - Putamen (basal ganglia)
Average nTPM: 64.2
Samples: 205

Max nTPM: 117.3
Min nTPM: 23.6
Std nTPM: 14.4
Median nTPM: 65.6
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 117.3
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 116.9
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 96.6
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 94.8
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 93.2
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 92.7
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 89.9
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 88.6
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 88.0
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 86.8
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 86.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 287.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 173.5
FF:10164-103B2 76 years, female 173.5
Globus pallidus
Scaled Tags Per Million: 167.4
FF:10161-103A8 76 years, female 207.0
FF:10175-103C4 60 years, female 127.8
Nucleus accumbens
Scaled Tags Per Million: 287.6
FF:10037-101F1 23-56 years, mixed 287.6
Putamen
Scaled Tags Per Million: 187.1
FF:10176-103C5 60 years, female 187.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 104.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 104.6
Samples: 4

Max nTPM: 110.0
Min nTPM: 101.4
Sample A Male 103.4
Sample B Male 101.4
Sample C Female 110.0
Sample D Female 103.4
Septum
nTPM: 104.1
Samples: 4

Max nTPM: 106.5
Min nTPM: 100.9
Sample A Male 103.6
Sample B Male 105.3
Sample C Female 106.5
Sample D Female 100.9
Ventral forebrain
nTPM: 99.8
Samples: 4

Max nTPM: 104.6
Min nTPM: 94.0
Sample A Male 94.0
Sample B Male 104.6
Sample C Female 102.2
Sample D Female 98.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 9.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 9.8
100144441 Antisense, RP_110407_02_B12, Mouse strain C57BL/6J (56 days, male) 9.8
Pallidum
Expression energy: 7.0
100144441 Antisense, RP_110407_02_B12, Mouse strain C57BL/6J (56 days, male) 7.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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