MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:105.6 nTPM
HPA:105.6 nTPM
GTEx:80.0 nTPM
FANTOM5:220.7 Scaled Tags Per Million
Mouse:117.8 nTPM
Allen mouse:8.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 105.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 96.7
2411 Female, age 72, unknown 103.6
1870 Female, age 42, unknown 100.7
1830 Male, age 51, unknown 99.0
1833 Male, age 53, unknown 97.8
2019 Male, age 18, unknown 97.4
2828 Female, age 72, unknown 96.0
1827 Male, age 72, unknown 95.0
2586 Male, age 75, left hemisphere 93.4
2666 Male, age 74, left hemisphere 92.3
2219 Male, age 76, both hemispheres 91.9
Dorsal raphe nucleus
nTPM: 94.5
2750 Male, age 76, both hemispheres 103.0
2298 Female, age 72, unknown 98.1
1828 Male, age 53, unknown 92.6
2016 Female, age 72, unknown 89.8
2047 Male, age 72, unknown 89.0
Inferior colliculus
nTPM: 95.2
2097 Female, age 72, unknown 100.1
1848 Female, age 42, unknown 97.0
1890 Male, age 53, unknown 92.8
2849 Male, age 72, unknown 90.9
Median raphe nucleus
nTPM: 96.0
2220 Male, age 76, midline 96.0
Pedunculopontine tegmental nucleus
nTPM: 94.4
2334 Male, age 80, both hemispheres 101.9
1921 Female, age 85, both hemispheres 95.1
2338 Male, age 61, both hemispheres 86.2
Periaquaductal grey, anterior
nTPM: 105.6
2502 Female, age 75, unknown 111.2
1947 Male, age 18, unknown 106.5
1795 Male, age 51, unknown 99.2
Periaquaductal grey, dorsal
nTPM: 89.7
2464 Female, age 72, unknown 92.7
1840 Male, age 53, unknown 90.4
1831 Male, age 72, unknown 88.8
2850 Male, age 76, both hemispheres 86.8
Periaquaductal grey, lateral
nTPM: 89.7
2053 Male, age 18, unknown 91.7
2140 Male, age 76, both hemispheres 89.3
2272 Male, age 74, both hemispheres 88.0
Pretectal area
nTPM: 96.2
1944 Female, age 72, unknown 101.2
2007 Male, age 72, unknown 99.3
1816 Male, age 51, unknown 99.2
1817 Female, age 42, unknown 97.4
1815 Male, age 53, unknown 97.3
2667 Female, age 75, unknown 95.9
2224 Female, age 72, unknown 95.3
2316 Male, age 76, right hemisphere 94.4
2825 Male, age 18, unknown 93.7
2407 Male, age 75, both hemispheres 93.1
2273 Male, age 74, both hemispheres 91.8
Red nucleus
nTPM: 100.2
1821 Female, age 72, unknown 108.6
2503 Female, age 72, unknown 106.7
1865 Male, age 51, unknown 103.7
2227 Male, age 72, unknown 103.2
1904 Male, age 53, unknown 103.1
1954 Female, age 42, unknown 102.6
2785 Male, age 18, unknown 100.3
2769 Male, age 72, unknown 99.2
2823 Male, age 76, right hemisphere 96.6
2725 Female, age 75, unknown 95.3
2584 Male, age 75, left hemisphere 92.8
2588 Male, age 74, left hemisphere 90.3
Substantia nigra
nTPM: 99.9
2241 Male, age 72, unknown 111.0
1916 Female, age 42, unknown 104.7
1941 Male, age 53, unknown 104.1
2409 Female, age 72, unknown 103.2
1851 Male, age 51, unknown 101.4
1889 Female, age 72, unknown 100.9
2590 Female, age 75, unknown 95.3
2665 Male, age 74, both hemispheres 93.8
2699 Male, age 18, unknown 93.8
2583 Male, age 75, right hemisphere 90.5
Superior colliculus
nTPM: 97.1
2668 Female, age 75, unknown 101.5
2261 Male, age 18, unknown 101.0
1796 Male, age 53, unknown 99.1
2087 Female, age 72, unknown 98.7
1839 Male, age 51, unknown 96.9
1913 Female, age 42, unknown 96.9
1895 Male, age 76, right hemisphere 96.2
1995 Male, age 72, unknown 94.7
2587 Male, age 74, left hemisphere 93.5
2664 Male, age 75, both hemispheres 92.3
Ventral tegmental area
nTPM: 98.9
2410 Female, age 72, unknown 108.3
2223 Female, age 72, unknown 102.2
2218 Male, age 76, both hemispheres 99.2
1915 Female, age 42, unknown 99.0
1942 Male, age 51, unknown 94.0
2021 Male, age 53, unknown 90.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 80.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 80.0
Samples: 139

Max nTPM: 137.0
Min nTPM: 8.2
Std nTPM: 18.3
Median nTPM: 81.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 137.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 123.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 119.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 113.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 112.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 112.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 110.6
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 109.0
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 107.3
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 105.8
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 101.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 220.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 220.7
FF:10158-103A5 76 years, female 220.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 117.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 117.8
Samples: 4

Max nTPM: 119.6
Min nTPM: 116.4
Sample A Male 117.0
Sample B Male 118.3
Sample C Female 119.6
Sample D Female 116.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.1
100144441 Antisense, RP_110407_02_B12, Mouse strain C57BL/6J (56 days, male) 8.1

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