MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:77.2 nTPM
HPA:77.2 nTPM
GTEx:72.4 nTPM
FANTOM5:59.7 Scaled Tags Per Million
Pig:10.8 nTPM
Mouse:7.4 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 77.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 71.2
2411 Female, age 72, unknown 74.0
2586 Male, age 75, left hemisphere 74.0
1827 Male, age 72, unknown 73.4
1870 Female, age 42, unknown 72.2
2666 Male, age 74, left hemisphere 72.1
2019 Male, age 18, unknown 70.8
2828 Female, age 72, unknown 70.7
1833 Male, age 53, unknown 68.9
2219 Male, age 76, both hemispheres 68.7
1830 Male, age 51, unknown 67.4
Dorsal raphe nucleus
nTPM: 72.3
1828 Male, age 53, unknown 75.5
2298 Female, age 72, unknown 73.7
2047 Male, age 72, unknown 71.8
2016 Female, age 72, unknown 70.4
2750 Male, age 76, both hemispheres 69.9
Inferior colliculus
nTPM: 71.0
2097 Female, age 72, unknown 74.9
1890 Male, age 53, unknown 73.4
1848 Female, age 42, unknown 68.5
2849 Male, age 72, unknown 67.3
Median raphe nucleus
nTPM: 74.1
2220 Male, age 76, midline 74.1
Pedunculopontine tegmental nucleus
nTPM: 69.4
2334 Male, age 80, both hemispheres 72.5
1921 Female, age 85, both hemispheres 68.5
2338 Male, age 61, both hemispheres 67.3
Periaquaductal grey, anterior
nTPM: 73.8
1947 Male, age 18, unknown 75.5
2502 Female, age 75, unknown 73.6
1795 Male, age 51, unknown 72.4
Periaquaductal grey, dorsal
nTPM: 69.4
1840 Male, age 53, unknown 71.8
2850 Male, age 76, both hemispheres 69.5
1831 Male, age 72, unknown 69.2
2464 Female, age 72, unknown 66.9
Periaquaductal grey, lateral
nTPM: 67.9
2140 Male, age 76, both hemispheres 69.4
2272 Male, age 74, both hemispheres 67.4
2053 Male, age 18, unknown 66.9
Pretectal area
nTPM: 70.5
1816 Male, age 51, unknown 74.8
1817 Female, age 42, unknown 74.2
1944 Female, age 72, unknown 72.8
2007 Male, age 72, unknown 72.6
1815 Male, age 53, unknown 70.6
2667 Female, age 75, unknown 70.4
2273 Male, age 74, both hemispheres 70.3
2825 Male, age 18, unknown 69.4
2224 Female, age 72, unknown 68.9
2316 Male, age 76, right hemisphere 66.1
2407 Male, age 75, both hemispheres 65.0
Red nucleus
nTPM: 72.4
2725 Female, age 75, unknown 76.7
2503 Female, age 72, unknown 75.9
1821 Female, age 72, unknown 75.0
2588 Male, age 74, left hemisphere 74.9
1954 Female, age 42, unknown 72.1
1904 Male, age 53, unknown 71.7
1865 Male, age 51, unknown 71.6
2227 Male, age 72, unknown 71.6
2769 Male, age 72, unknown 71.5
2785 Male, age 18, unknown 70.6
2823 Male, age 76, right hemisphere 69.7
2584 Male, age 75, left hemisphere 66.9
Substantia nigra
nTPM: 77.2
1916 Female, age 42, unknown 87.4
1851 Male, age 51, unknown 82.4
2241 Male, age 72, unknown 79.6
2699 Male, age 18, unknown 78.7
2409 Female, age 72, unknown 77.0
2665 Male, age 74, both hemispheres 76.3
1941 Male, age 53, unknown 76.1
1889 Female, age 72, unknown 74.7
2590 Female, age 75, unknown 70.7
2583 Male, age 75, right hemisphere 68.9
Superior colliculus
nTPM: 68.9
2087 Female, age 72, unknown 72.5
2668 Female, age 75, unknown 70.4
2261 Male, age 18, unknown 69.7
1796 Male, age 53, unknown 69.5
2587 Male, age 74, left hemisphere 69.0
1895 Male, age 76, right hemisphere 68.2
1995 Male, age 72, unknown 67.9
2664 Male, age 75, both hemispheres 67.7
1913 Female, age 42, unknown 67.3
1839 Male, age 51, unknown 66.5
Ventral tegmental area
nTPM: 74.2
1915 Female, age 42, unknown 78.8
2410 Female, age 72, unknown 78.6
2218 Male, age 76, both hemispheres 75.3
1942 Male, age 51, unknown 73.9
2223 Female, age 72, unknown 70.6
2021 Male, age 53, unknown 68.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 72.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 72.4
Samples: 139

Max nTPM: 112.4
Min nTPM: 41.3
Std nTPM: 13.6
Median nTPM: 70.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 112.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 109.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 108.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 106.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 100.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 97.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 96.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 96.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 90.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 90.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 90.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 59.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 59.7
FF:10158-103A5 76 years, female 59.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.8
Pig sample Sample description nTPM
Midbrain
nTPM: 10.6
Samples: 4

Max nTPM: 11.2
Min nTPM: 9.7
Sample A Female 10.9
Sample B Female 10.5
Sample C Male 9.7
Sample D Male 11.2
Periaqueductal gray
nTPM: 10.8
Samples: 3

Max nTPM: 11.1
Min nTPM: 10.4
Sample B Female 10.8
Sample C Male 11.1
Sample D Male 10.4
Substantia nigra
nTPM: 10.7
Samples: 4

Max nTPM: 11.8
Min nTPM: 9.9
Sample A Female 10.0
Sample B Female 9.9
Sample C Male 11.8
Sample D Male 11.2
Superior colliculi
nTPM: 10.1
Samples: 4

Max nTPM: 10.7
Min nTPM: 9.2
Sample A Female 9.2
Sample B Female 10.7
Sample C Male 10.3
Sample D Male 10.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.4
Samples: 4

Max nTPM: 9.2
Min nTPM: 5.6
Sample A Male 7.0
Sample B Male 7.9
Sample C Female 5.6
Sample D Female 9.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
75043152 Antisense, RP_060412_05_B03, Mouse strain C57BL/6J (56 days, male) 0.4
72001867 Antisense, RP_050915_02_D10, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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