HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:18.1 nTPM
HPA:18.1 nTPM
GTEx:30.7 nTPM
FANTOM5:16.7 Scaled Tags Per Million
Pig:12.7 nTPM
Mouse:6.3 nTPM
Allen mouse:0.2 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 18.1
Sample id Sample description nTPM
Hippocampus
nTPM: 15.2
1911 Female, age 85, right hemisphere 17.4
2529 Female, age 94, left hemisphere 16.6
2148 Female, age 91, left hemisphere 14.7
2621 Female, age 67, right hemisphere 14.6
1855 Male, age 76, left hemisphere 14.5
1898 Male, age 80, left hemisphere 13.2
Dentate gyrus
nTPM: 15.4
2530 Female, age 94, left hemisphere 17.4
2010 Male, age 76, both hemispheres 16.9
2528 Male, age 74, both hemispheres 15.9
2531 Female, age 67, both hemispheres 15.6
2246 Female, age 85, both hemispheres 14.3
1927 Female, age 91, both hemispheres 12.2
Entorhinal gyrus
nTPM: 15.1
2117 Female, age 91, right hemisphere 19.6
2764 Male, age 80, right hemisphere 17.9
1787 Male, age 76, left hemisphere 14.4
2686 Male, age 75, right hemisphere 14.2
2613 Female, age 94, left hemisphere 12.3
1938 Female, age 85, left hemisphere 11.9
Hippocampus, CA1
nTPM: 14.3
2082 Female, age 91, right hemisphere 16.5
2527 Male, age 74, both hemispheres 14.6
2749 Male, age 80, left hemisphere 14.2
1873 Female, age 85, both hemispheres 13.7
2045 Male, age 76, both hemispheres 12.5
Hippocampus, CA2
nTPM: 14.7
2249 Male, age 74, both hemispheres 16.5
2113 Female, age 91, right hemisphere 15.9
1940 Female, age 85, left hemisphere 15.3
2437 Female, age 94, left hemisphere 15.1
1963 Male, age 80, left hemisphere 15.0
1892 Male, age 76, both hemispheres 10.3
Hippocampus, CA3
nTPM: 14.7
1891 Female, age 85, both hemispheres 18.2
2620 Female, age 94, left hemisphere 17.9
1867 Male, age 76, both hemispheres 14.3
2861 Female, age 67, both hemispheres 13.2
2137 Male, age 80, left hemisphere 12.4
2436 Male, age 74, both hemispheres 12.1
Parahippocampal cortex
nTPM: 13.7
2692 Male, age 74, both hemispheres 17.0
2018 Male, age 76, both hemispheres 16.5
2532 Female, age 72, left hemisphere 16.2
1990 Female, age 91, right hemisphere 15.3
2245 Female, age 91, both hemispheres 13.3
1933 Female, age 85, both hemispheres 12.4
1850 Male, age 80, both hemispheres 12.3
2693 Female, age 94, both hemispheres 12.2
2250 Female, age 67, right hemisphere 11.5
2622 Female, age 67, right hemisphere 10.7
Perirhinal gyrus
nTPM: 10.7
1794 Male, age 80, right hemisphere 11.4
2848 Male, age 76, right hemisphere 11.4
2521 Female, age 94, right hemisphere 11.0
1847 Female, age 91, left hemisphere 10.3
1841 Female, age 85, right hemisphere 9.1
Subiculum
nTPM: 18.1
2042 Male, age 76, both hemispheres 24.5
1901 Male, age 80, both hemispheres 20.2
2438 Female, age 94, left hemisphere 16.7
2619 Male, age 74, both hemispheres 16.5
2729 Female, age 91, right hemisphere 15.7
1977 Female, age 85, both hemispheres 15.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 30.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 30.7
Samples: 197

Max nTPM: 120.1
Min nTPM: 9.7
Std nTPM: 16.5
Median nTPM: 26.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 120.1
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 91.3
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 86.3
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 80.9
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 78.6
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 70.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 69.4
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 64.4
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 61.1
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 59.7
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 59.5
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 16.7
FF:10153-102I9 76 years, female 23.0
FF:10169-103B7 60 years, female 10.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 12.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 12.7
Samples: 4

Max nTPM: 18.2
Min nTPM: 7.4
Sample A Female 18.2
Sample B Female 9.4
Sample C Male 15.7
Sample D Male 7.4
Entorhinal cortex
nTPM: 6.8
Samples: 4

Max nTPM: 7.4
Min nTPM: 6.2
Sample A Female 7.4
Sample B Female 7.0
Sample C Male 6.5
Sample D Male 6.2
Subiculum
nTPM: 8.1
Samples: 4

Max nTPM: 9.7
Min nTPM: 7.2
Sample A Female 9.7
Sample B Female 7.8
Sample C Male 7.2
Sample D Male 7.6
Ventral hippocampus
nTPM: 10.8
Samples: 4

Max nTPM: 12.1
Min nTPM: 7.1
Sample A Female 11.8
Sample B Female 7.1
Sample C Male 12.0
Sample D Male 12.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 6.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 4.5
Samples: 4

Max nTPM: 6.0
Min nTPM: 2.8
Sample A Male 6.0
Sample B Male 4.8
Sample C Female 4.4
Sample D Female 2.8
Hippocampal formation
nTPM: 6.3
Samples: 4

Max nTPM: 8.0
Min nTPM: 4.1
Sample A Male 4.1
Sample B Male 7.2
Sample C Female 8.0
Sample D Female 5.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.2
69290650 Antisense, RP_050407_04_D10, Mouse strain C57BL/6J (56 days, male) 0.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.