MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:12.3 nTPM
HPA:12.3 nTPM
GTEx:13.1 nTPM
FANTOM5:3.1 Scaled Tags Per Million
Pig:12.1 nTPM
Mouse:10.3 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 12.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.4
2019 Male, age 18, unknown 10.5
1827 Male, age 72, unknown 9.3
2219 Male, age 76, both hemispheres 8.7
2411 Female, age 72, unknown 8.5
2586 Male, age 75, left hemisphere 8.3
1833 Male, age 53, unknown 7.9
1870 Female, age 42, unknown 7.9
1830 Male, age 51, unknown 7.8
2666 Male, age 74, left hemisphere 7.5
2828 Female, age 72, unknown 7.5
Dorsal raphe nucleus
nTPM: 9.9
2298 Female, age 72, unknown 12.4
2016 Female, age 72, unknown 10.3
1828 Male, age 53, unknown 9.7
2047 Male, age 72, unknown 8.8
2750 Male, age 76, both hemispheres 8.5
Inferior colliculus
nTPM: 8.6
2097 Female, age 72, unknown 9.4
1890 Male, age 53, unknown 9.0
1848 Female, age 42, unknown 8.5
2849 Male, age 72, unknown 7.8
Median raphe nucleus
nTPM: 8.7
2220 Male, age 76, midline 8.7
Pedunculopontine tegmental nucleus
nTPM: 8.0
1921 Female, age 85, both hemispheres 8.6
2334 Male, age 80, both hemispheres 8.2
2338 Male, age 61, both hemispheres 7.4
Periaquaductal grey, anterior
nTPM: 9.8
1795 Male, age 51, unknown 10.3
1947 Male, age 18, unknown 9.8
2502 Female, age 75, unknown 9.2
Periaquaductal grey, dorsal
nTPM: 10.0
2850 Male, age 76, both hemispheres 12.3
1840 Male, age 53, unknown 9.5
1831 Male, age 72, unknown 9.4
2464 Female, age 72, unknown 9.0
Periaquaductal grey, lateral
nTPM: 12.3
2272 Male, age 74, both hemispheres 17.8
2140 Male, age 76, both hemispheres 10.0
2053 Male, age 18, unknown 8.9
Pretectal area
nTPM: 10.9
2273 Male, age 74, both hemispheres 16.1
1816 Male, age 51, unknown 12.6
1944 Female, age 72, unknown 12.2
1817 Female, age 42, unknown 11.3
2007 Male, age 72, unknown 11.3
1815 Male, age 53, unknown 10.9
2224 Female, age 72, unknown 10.4
2667 Female, age 75, unknown 9.7
2407 Male, age 75, both hemispheres 8.6
2825 Male, age 18, unknown 8.6
2316 Male, age 76, right hemisphere 7.9
Red nucleus
nTPM: 8.3
2725 Female, age 75, unknown 9.7
2785 Male, age 18, unknown 9.7
1821 Female, age 72, unknown 9.0
1904 Male, age 53, unknown 8.5
1954 Female, age 42, unknown 8.4
2769 Male, age 72, unknown 8.0
1865 Male, age 51, unknown 7.9
2823 Male, age 76, right hemisphere 7.9
2584 Male, age 75, left hemisphere 7.8
2227 Male, age 72, unknown 7.6
2503 Female, age 72, unknown 7.5
2588 Male, age 74, left hemisphere 7.3
Substantia nigra
nTPM: 9.8
2241 Male, age 72, unknown 11.6
1941 Male, age 53, unknown 10.9
1889 Female, age 72, unknown 10.8
1916 Female, age 42, unknown 10.5
2409 Female, age 72, unknown 10.1
1851 Male, age 51, unknown 10.0
2590 Female, age 75, unknown 9.2
2583 Male, age 75, right hemisphere 8.8
2699 Male, age 18, unknown 8.8
2665 Male, age 74, both hemispheres 7.6
Superior colliculus
nTPM: 9.2
2087 Female, age 72, unknown 10.4
2261 Male, age 18, unknown 10.2
2587 Male, age 74, left hemisphere 9.7
1995 Male, age 72, unknown 9.6
2668 Female, age 75, unknown 9.2
1796 Male, age 53, unknown 9.0
1913 Female, age 42, unknown 9.0
2664 Male, age 75, both hemispheres 8.5
1895 Male, age 76, right hemisphere 8.4
1839 Male, age 51, unknown 8.2
Ventral tegmental area
nTPM: 8.6
2218 Male, age 76, both hemispheres 9.3
1915 Female, age 42, unknown 9.2
2410 Female, age 72, unknown 9.1
1942 Male, age 51, unknown 8.6
2021 Male, age 53, unknown 7.9
2223 Female, age 72, unknown 7.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.1
Samples: 139

Max nTPM: 37.3
Min nTPM: 1.6
Std nTPM: 6.4
Median nTPM: 11.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 37.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 34.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 32.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 29.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 28.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 26.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 25.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 24.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 24.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 23.3
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 22.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 3.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3.1
FF:10158-103A5 76 years, female 3.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.1
Pig sample Sample description nTPM
Midbrain
nTPM: 7.2
Samples: 4

Max nTPM: 10.0
Min nTPM: 3.4
Sample A Female 3.4
Sample B Female 8.0
Sample C Male 7.2
Sample D Male 10.0
Periaqueductal gray
nTPM: 12.1
Samples: 3

Max nTPM: 14.8
Min nTPM: 10.4
Sample B Female 11.1
Sample C Male 10.4
Sample D Male 14.8
Substantia nigra
nTPM: 6.1
Samples: 4

Max nTPM: 8.6
Min nTPM: 3.2
Sample A Female 3.2
Sample B Female 6.5
Sample C Male 6.2
Sample D Male 8.6
Superior colliculi
nTPM: 5.9
Samples: 4

Max nTPM: 7.4
Min nTPM: 3.5
Sample A Female 3.5
Sample B Female 6.2
Sample C Male 6.6
Sample D Male 7.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.3
Samples: 4

Max nTPM: 11.8
Min nTPM: 9.5
Sample A Male 11.8
Sample B Male 9.8
Sample C Female 9.5
Sample D Female 9.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
75850264 Antisense, RP_060601_02_F09, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.