MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:85.4 nTPM
HPA:85.4 nTPM
GTEx:82.0 nTPM
FANTOM5:93.0 Scaled Tags Per Million
Pig:27.0 nTPM
Mouse:71.0 nTPM
Allen mouse:10.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 85.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 78.1
2219 Male, age 76, both hemispheres 82.1
2019 Male, age 18, unknown 81.7
2411 Female, age 72, unknown 81.7
2666 Male, age 74, left hemisphere 79.6
1870 Female, age 42, unknown 77.7
1827 Male, age 72, unknown 77.5
1833 Male, age 53, unknown 76.9
1830 Male, age 51, unknown 75.5
2828 Female, age 72, unknown 75.1
2586 Male, age 75, left hemisphere 73.0
Dorsal raphe nucleus
nTPM: 80.1
2047 Male, age 72, unknown 83.3
1828 Male, age 53, unknown 82.4
2750 Male, age 76, both hemispheres 82.2
2298 Female, age 72, unknown 79.7
2016 Female, age 72, unknown 72.8
Inferior colliculus
nTPM: 74.8
2097 Female, age 72, unknown 75.4
2849 Male, age 72, unknown 75.3
1848 Female, age 42, unknown 75.0
1890 Male, age 53, unknown 73.5
Median raphe nucleus
nTPM: 84.5
2220 Male, age 76, midline 84.5
Pedunculopontine tegmental nucleus
nTPM: 82.3
2334 Male, age 80, both hemispheres 85.7
2338 Male, age 61, both hemispheres 80.8
1921 Female, age 85, both hemispheres 80.4
Periaquaductal grey, anterior
nTPM: 75.6
2502 Female, age 75, unknown 78.0
1795 Male, age 51, unknown 74.4
1947 Male, age 18, unknown 74.4
Periaquaductal grey, dorsal
nTPM: 73.4
2464 Female, age 72, unknown 75.2
2850 Male, age 76, both hemispheres 73.7
1840 Male, age 53, unknown 73.3
1831 Male, age 72, unknown 71.3
Periaquaductal grey, lateral
nTPM: 71.8
2272 Male, age 74, both hemispheres 73.2
2053 Male, age 18, unknown 72.1
2140 Male, age 76, both hemispheres 70.2
Pretectal area
nTPM: 78.1
1817 Female, age 42, unknown 83.7
2007 Male, age 72, unknown 83.5
1944 Female, age 72, unknown 83.3
1816 Male, age 51, unknown 81.6
1815 Male, age 53, unknown 79.8
2224 Female, age 72, unknown 76.9
2667 Female, age 75, unknown 76.3
2407 Male, age 75, both hemispheres 75.5
2825 Male, age 18, unknown 74.0
2273 Male, age 74, both hemispheres 73.6
2316 Male, age 76, right hemisphere 70.6
Red nucleus
nTPM: 78.8
1821 Female, age 72, unknown 84.6
2725 Female, age 75, unknown 82.8
2785 Male, age 18, unknown 80.0
2503 Female, age 72, unknown 79.7
1954 Female, age 42, unknown 79.5
1865 Male, age 51, unknown 79.4
2588 Male, age 74, left hemisphere 79.1
1904 Male, age 53, unknown 76.9
2823 Male, age 76, right hemisphere 76.4
2227 Male, age 72, unknown 76.2
2769 Male, age 72, unknown 75.8
2584 Male, age 75, left hemisphere 75.6
Substantia nigra
nTPM: 85.4
1916 Female, age 42, unknown 97.9
1941 Male, age 53, unknown 91.4
2241 Male, age 72, unknown 91.0
1851 Male, age 51, unknown 89.1
2699 Male, age 18, unknown 87.1
2409 Female, age 72, unknown 84.2
1889 Female, age 72, unknown 83.9
2665 Male, age 74, both hemispheres 79.3
2590 Female, age 75, unknown 75.5
2583 Male, age 75, right hemisphere 74.8
Superior colliculus
nTPM: 75.5
2668 Female, age 75, unknown 78.8
1895 Male, age 76, right hemisphere 78.6
2087 Female, age 72, unknown 78.1
2587 Male, age 74, left hemisphere 77.1
1796 Male, age 53, unknown 75.7
1839 Male, age 51, unknown 75.3
1913 Female, age 42, unknown 74.6
2261 Male, age 18, unknown 73.9
2664 Male, age 75, both hemispheres 71.7
1995 Male, age 72, unknown 71.3
Ventral tegmental area
nTPM: 81.5
2410 Female, age 72, unknown 85.8
2218 Male, age 76, both hemispheres 85.7
1915 Female, age 42, unknown 85.3
2223 Female, age 72, unknown 79.0
1942 Male, age 51, unknown 77.2
2021 Male, age 53, unknown 75.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 82.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 82.0
Samples: 139

Max nTPM: 187.3
Min nTPM: 47.5
Std nTPM: 22.7
Median nTPM: 75.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 187.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 159.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 158.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 152.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 141.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 131.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 120.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 117.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 116.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 115.2
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 114.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 93.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 93.0
FF:10158-103A5 76 years, female 93.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.0
Pig sample Sample description nTPM
Midbrain
nTPM: 24.6
Samples: 4

Max nTPM: 27.5
Min nTPM: 22.3
Sample A Female 22.3
Sample B Female 27.5
Sample C Male 23.2
Sample D Male 25.2
Periaqueductal gray
nTPM: 23.0
Samples: 3

Max nTPM: 24.7
Min nTPM: 21.2
Sample B Female 23.0
Sample C Male 24.7
Sample D Male 21.2
Substantia nigra
nTPM: 27.0
Samples: 4

Max nTPM: 33.5
Min nTPM: 21.6
Sample A Female 30.3
Sample B Female 21.6
Sample C Male 33.5
Sample D Male 22.6
Superior colliculi
nTPM: 24.6
Samples: 4

Max nTPM: 29.1
Min nTPM: 15.5
Sample A Female 29.1
Sample B Female 15.5
Sample C Male 27.2
Sample D Male 26.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 71.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 71.1
Samples: 4

Max nTPM: 73.8
Min nTPM: 66.1
Sample A Male 66.1
Sample B Male 72.6
Sample C Female 71.7
Sample D Female 73.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.1
70429465 Antisense, RP_050614_01_G02, Mouse strain C57BL/6J (56 days, male) 10.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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