MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:87.2 nTPM
HPA:87.2 nTPM
GTEx:103.7 nTPM
FANTOM5:243.3 Scaled Tags Per Million
Pig:113.5 nTPM
Mouse:154.3 nTPM
Allen mouse:7.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 87.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 71.5
1827 Male, age 72, unknown 75.4
2411 Female, age 72, unknown 75.4
2828 Female, age 72, unknown 74.7
2219 Male, age 76, both hemispheres 73.0
1870 Female, age 42, unknown 72.9
2019 Male, age 18, unknown 71.8
1833 Male, age 53, unknown 70.8
1830 Male, age 51, unknown 68.5
2666 Male, age 74, left hemisphere 68.0
2586 Male, age 75, left hemisphere 64.1
Dorsal raphe nucleus
nTPM: 78.9
2298 Female, age 72, unknown 86.9
2750 Male, age 76, both hemispheres 80.5
2047 Male, age 72, unknown 80.2
1828 Male, age 53, unknown 74.9
2016 Female, age 72, unknown 71.8
Inferior colliculus
nTPM: 71.4
2097 Female, age 72, unknown 79.0
1890 Male, age 53, unknown 70.3
1848 Female, age 42, unknown 69.1
2849 Male, age 72, unknown 67.2
Median raphe nucleus
nTPM: 87.2
2220 Male, age 76, midline 87.2
Pedunculopontine tegmental nucleus
nTPM: 78.0
2334 Male, age 80, both hemispheres 83.8
2338 Male, age 61, both hemispheres 75.8
1921 Female, age 85, both hemispheres 74.4
Periaquaductal grey, anterior
nTPM: 75.9
1795 Male, age 51, unknown 77.0
2502 Female, age 75, unknown 76.3
1947 Male, age 18, unknown 74.4
Periaquaductal grey, dorsal
nTPM: 74.1
1840 Male, age 53, unknown 77.9
2850 Male, age 76, both hemispheres 77.4
1831 Male, age 72, unknown 71.6
2464 Female, age 72, unknown 69.4
Periaquaductal grey, lateral
nTPM: 73.1
2053 Male, age 18, unknown 75.0
2140 Male, age 76, both hemispheres 72.9
2272 Male, age 74, both hemispheres 71.6
Pretectal area
nTPM: 77.8
1816 Male, age 51, unknown 84.2
1944 Female, age 72, unknown 84.1
1817 Female, age 42, unknown 81.4
1815 Male, age 53, unknown 81.3
2007 Male, age 72, unknown 79.0
2273 Male, age 74, both hemispheres 78.4
2224 Female, age 72, unknown 77.4
2407 Male, age 75, both hemispheres 75.1
2667 Female, age 75, unknown 73.2
2825 Male, age 18, unknown 73.1
2316 Male, age 76, right hemisphere 68.3
Red nucleus
nTPM: 71.8
2725 Female, age 75, unknown 81.8
1821 Female, age 72, unknown 76.2
1954 Female, age 42, unknown 73.4
1904 Male, age 53, unknown 72.8
1865 Male, age 51, unknown 72.0
2584 Male, age 75, left hemisphere 71.2
2785 Male, age 18, unknown 71.1
2503 Female, age 72, unknown 70.8
2227 Male, age 72, unknown 70.6
2823 Male, age 76, right hemisphere 69.3
2769 Male, age 72, unknown 68.5
2588 Male, age 74, left hemisphere 63.8
Substantia nigra
nTPM: 83.2
2241 Male, age 72, unknown 96.2
1916 Female, age 42, unknown 94.1
1851 Male, age 51, unknown 88.0
2409 Female, age 72, unknown 86.1
2665 Male, age 74, both hemispheres 83.2
1889 Female, age 72, unknown 81.4
2699 Male, age 18, unknown 79.4
1941 Male, age 53, unknown 76.9
2590 Female, age 75, unknown 75.8
2583 Male, age 75, right hemisphere 71.2
Superior colliculus
nTPM: 72.9
2087 Female, age 72, unknown 83.6
2261 Male, age 18, unknown 79.0
1796 Male, age 53, unknown 75.1
1913 Female, age 42, unknown 72.9
2587 Male, age 74, left hemisphere 72.6
2668 Female, age 75, unknown 72.3
2664 Male, age 75, both hemispheres 70.3
1995 Male, age 72, unknown 68.2
1895 Male, age 76, right hemisphere 67.6
1839 Male, age 51, unknown 67.2
Ventral tegmental area
nTPM: 80.6
2218 Male, age 76, both hemispheres 84.0
1915 Female, age 42, unknown 82.1
2410 Female, age 72, unknown 80.7
2223 Female, age 72, unknown 79.9
2021 Male, age 53, unknown 78.6
1942 Male, age 51, unknown 78.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 103.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 103.7
Samples: 139

Max nTPM: 169.3
Min nTPM: 48.5
Std nTPM: 24.1
Median nTPM: 99.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 169.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 167.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 159.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 159.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 157.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 154.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 152.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 149.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 146.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 144.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 142.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 243.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 243.3
FF:10158-103A5 76 years, female 243.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 113.5
Pig sample Sample description nTPM
Midbrain
nTPM: 113.5
Samples: 4

Max nTPM: 157.5
Min nTPM: 91.4
Sample A Female 108.3
Sample B Female 91.4
Sample C Male 157.5
Sample D Male 96.7
Periaqueductal gray
nTPM: 76.5
Samples: 3

Max nTPM: 86.4
Min nTPM: 68.5
Sample B Female 68.5
Sample C Male 86.4
Sample D Male 74.6
Substantia nigra
nTPM: 90.7
Samples: 4

Max nTPM: 118.0
Min nTPM: 59.5
Sample A Female 118.0
Sample B Female 82.5
Sample C Male 102.7
Sample D Male 59.5
Superior colliculi
nTPM: 105.8
Samples: 4

Max nTPM: 149.6
Min nTPM: 73.6
Sample A Female 102.8
Sample B Female 73.6
Sample C Male 149.6
Sample D Male 97.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 154.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 154.3
Samples: 4

Max nTPM: 158.0
Min nTPM: 151.7
Sample A Male 151.8
Sample B Male 155.8
Sample C Female 158.0
Sample D Female 151.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.9
71608391 Antisense, RP_050927_01_F08, Mouse strain C57BL/6J (56 days, male) 10.4
356490 Antisense, RP_040617_02_F05, Mouse strain C57BL/6J (56 days, male) 5.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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