MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:69.0 nTPM
HPA:69.0 nTPM
GTEx:126.0 nTPM
FANTOM5:23.5 Scaled Tags Per Million
Pig:46.9 nTPM
Mouse:6.5 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 69.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 61.1
2828 Female, age 72, unknown 67.4
1833 Male, age 53, unknown 65.0
1870 Female, age 42, unknown 63.8
2586 Male, age 75, left hemisphere 61.1
2219 Male, age 76, both hemispheres 60.2
1827 Male, age 72, unknown 60.0
2411 Female, age 72, unknown 59.9
2019 Male, age 18, unknown 59.1
1830 Male, age 51, unknown 58.8
2666 Male, age 74, left hemisphere 55.3
Dorsal raphe nucleus
nTPM: 69.0
2298 Female, age 72, unknown 76.1
2016 Female, age 72, unknown 72.1
1828 Male, age 53, unknown 68.3
2047 Male, age 72, unknown 64.4
2750 Male, age 76, both hemispheres 64.2
Inferior colliculus
nTPM: 59.3
1890 Male, age 53, unknown 61.5
2097 Female, age 72, unknown 61.1
2849 Male, age 72, unknown 59.3
1848 Female, age 42, unknown 55.1
Median raphe nucleus
nTPM: 62.3
2220 Male, age 76, midline 62.3
Pedunculopontine tegmental nucleus
nTPM: 63.4
2334 Male, age 80, both hemispheres 64.1
2338 Male, age 61, both hemispheres 63.2
1921 Female, age 85, both hemispheres 63.0
Periaquaductal grey, anterior
nTPM: 57.0
1795 Male, age 51, unknown 60.1
2502 Female, age 75, unknown 55.9
1947 Male, age 18, unknown 55.1
Periaquaductal grey, dorsal
nTPM: 66.7
2850 Male, age 76, both hemispheres 75.2
1840 Male, age 53, unknown 66.5
1831 Male, age 72, unknown 64.8
2464 Female, age 72, unknown 60.3
Periaquaductal grey, lateral
nTPM: 67.0
2053 Male, age 18, unknown 71.8
2140 Male, age 76, both hemispheres 65.6
2272 Male, age 74, both hemispheres 63.6
Pretectal area
nTPM: 64.4
2273 Male, age 74, both hemispheres 77.1
1944 Female, age 72, unknown 76.3
2667 Female, age 75, unknown 67.3
1816 Male, age 51, unknown 67.1
1815 Male, age 53, unknown 65.4
2825 Male, age 18, unknown 61.7
1817 Female, age 42, unknown 61.6
2407 Male, age 75, both hemispheres 61.0
2007 Male, age 72, unknown 58.2
2224 Female, age 72, unknown 57.8
2316 Male, age 76, right hemisphere 55.4
Red nucleus
nTPM: 64.3
2823 Male, age 76, right hemisphere 69.2
1954 Female, age 42, unknown 67.7
1904 Male, age 53, unknown 67.1
2503 Female, age 72, unknown 67.1
2584 Male, age 75, left hemisphere 66.5
2227 Male, age 72, unknown 65.0
1865 Male, age 51, unknown 64.9
2769 Male, age 72, unknown 63.3
1821 Female, age 72, unknown 63.1
2725 Female, age 75, unknown 60.9
2785 Male, age 18, unknown 58.9
2588 Male, age 74, left hemisphere 57.6
Substantia nigra
nTPM: 63.6
2699 Male, age 18, unknown 68.3
2590 Female, age 75, unknown 66.3
2665 Male, age 74, both hemispheres 66.1
2583 Male, age 75, right hemisphere 65.0
2409 Female, age 72, unknown 64.1
2241 Male, age 72, unknown 63.8
1851 Male, age 51, unknown 62.2
1889 Female, age 72, unknown 61.5
1916 Female, age 42, unknown 59.9
1941 Male, age 53, unknown 58.5
Superior colliculus
nTPM: 66.3
1995 Male, age 72, unknown 80.7
1913 Female, age 42, unknown 72.6
2087 Female, age 72, unknown 72.0
2261 Male, age 18, unknown 70.2
2668 Female, age 75, unknown 63.9
2664 Male, age 75, both hemispheres 62.6
2587 Male, age 74, left hemisphere 61.7
1895 Male, age 76, right hemisphere 61.0
1796 Male, age 53, unknown 60.2
1839 Male, age 51, unknown 58.3
Ventral tegmental area
nTPM: 61.8
1942 Male, age 51, unknown 64.6
1915 Female, age 42, unknown 63.3
2218 Male, age 76, both hemispheres 62.6
2410 Female, age 72, unknown 61.8
2021 Male, age 53, unknown 60.9
2223 Female, age 72, unknown 57.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 126.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 126.0
Samples: 139

Max nTPM: 302.8
Min nTPM: 31.5
Std nTPM: 47.7
Median nTPM: 124.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 302.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 264.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 258.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 238.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 235.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 220.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 215.9
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 208.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 201.5
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 199.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 194.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.5
FF:10158-103A5 76 years, female 23.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 46.9
Pig sample Sample description nTPM
Midbrain
nTPM: 7.0
Samples: 4

Max nTPM: 11.8
Min nTPM: 3.8
Sample A Female 11.8
Sample B Female 7.4
Sample C Male 4.9
Sample D Male 3.8
Periaqueductal gray
nTPM: 5.2
Samples: 3

Max nTPM: 6.6
Min nTPM: 4.3
Sample B Female 4.3
Sample C Male 4.6
Sample D Male 6.6
Substantia nigra
nTPM: 12.2
Samples: 4

Max nTPM: 19.7
Min nTPM: 8.0
Sample A Female 11.0
Sample B Female 19.7
Sample C Male 10.2
Sample D Male 8.0
Superior colliculi
nTPM: 46.9
Samples: 4

Max nTPM: 136.7
Min nTPM: 5.0
Sample A Female 38.3
Sample B Female 136.7
Sample C Male 5.0
Sample D Male 7.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.5
Samples: 4

Max nTPM: 8.2
Min nTPM: 5.4
Sample A Male 8.2
Sample B Male 5.4
Sample C Female 6.7
Sample D Female 5.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68076899 Antisense, RP_040929_01_A02, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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