BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:46.5 nTPM
HPA:46.5 nTPM
GTEx:33.3 nTPM
FANTOM5:94.8 Scaled Tags Per Million
Pig:38.9 nTPM
Mouse:13.5 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi
Antibody CAB004526
Glial cells Medium
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 46.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 33.6
2481 Female, age 94, left hemisphere 37.0
2288 Male, age 75, left hemisphere 36.9
1857 Female, age 85, left hemisphere 34.3
1854 Male, age 80, left hemisphere 34.2
2290 Female, age 72, unknown 33.9
2846 Female, age 79, unknown 33.6
2289 Male, age 61, right hemisphere 30.4
1781 Male, age 74, unknown 28.2
Claustrum
nTPM: 29.6
2292 Female, age 85, both hemispheres 32.9
1956 Male, age 74, unknown 32.1
2392 Female, age 94, both hemispheres 31.3
2196 Female, age 79, unknown 31.0
2491 Male, age 75, both hemispheres 30.5
2198 Male, age 80, both hemispheres 27.9
2568 Male, age 61, both hemispheres 27.7
2284 Female, age 91, both hemispheres 27.2
2645 Female, age 72, unknown 25.9
Globus pallidus, externus
nTPM: 46.5
2646 Male, age 61, right hemisphere 55.9
1996 Male, age 80, right hemisphere 54.3
2567 Female, age 72, unknown 43.0
2772 Female, age 79, unknown 42.7
2395 Male, age 75, both hemispheres 36.5
Globus pallidus, internus
nTPM: 46.5
2037 Male, age 80, right hemisphere 50.3
2111 Female, age 85, right hemisphere 49.7
2778 Female, age 91, both hemispheres 48.1
1818 Male, age 74, unknown 46.2
2483 Female, age 94, right hemisphere 45.9
2287 Male, age 75, right hemisphere 43.8
2566 Female, age 72, unknown 41.5
Nucleus accumbens
nTPM: 34.9
2391 Female, age 94, left hemisphere 40.1
2286 Male, age 75, left hemisphere 37.9
2698 Female, age 72, unknown 37.4
1806 Female, age 85, left hemisphere 35.6
2732 Male, age 80, right hemisphere 35.4
2824 Male, age 61, right hemisphere 33.2
1783 Male, age 74, unknown 29.9
1856 Female, age 91, right hemisphere 29.5
Nucleus basalis of Meynert
nTPM: 40.2
2569 Male, age 61, both hemispheres 62.4
2393 Male, age 80, right hemisphere 34.3
2484 Female, age 94, left hemisphere 32.8
2821 Male, age 75, both hemispheres 31.1
Nucleus of the diagonal band
nTPM: 26.8
1812 Female, age 91, both hemispheres 27.8
1979 Male, age 74, unknown 27.6
2775 Male, age 80, right hemisphere 26.7
2195 Female, age 85, both hemispheres 26.5
2029 Male, age 61, right hemisphere 25.3
Olfactory tubercle
nTPM: 29.5
1846 Male, age 80, right hemisphere 33.0
2856 Male, age 75, right hemisphere 32.5
2487 Female, age 94, left hemisphere 26.6
1998 Female, age 91, both hemispheres 26.0
Putamen
nTPM: 33.8
2482 Female, age 94, left hemisphere 39.4
2647 Male, age 75, left hemisphere 36.3
1829 Male, age 74, unknown 35.4
2489 Female, age 72, unknown 35.1
1937 Female, age 91, right hemisphere 33.1
2466 Female, age 79, unknown 29.6
1838 Male, age 80, right hemisphere 27.5
Septal nuclei
nTPM: 30.4
2394 Male, age 61, left hemisphere 37.2
2199 Male, age 80, right hemisphere 36.7
2059 Female, age 85, both hemispheres 32.7
2629 Female, age 94, right hemisphere 27.7
2031 Female, age 72, unknown 26.9
2009 Female, age 91, both hemispheres 26.7
1960 Male, age 74, unknown 25.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 33.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 29.0
Samples: 246

Max nTPM: 68.5
Min nTPM: 10.2
Std nTPM: 8.8
Median nTPM: 28.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 68.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 59.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 56.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 48.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 48.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 47.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 46.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 46.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 45.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 45.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 44.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 29.0
Samples: 246

Max nTPM: 75.6
Min nTPM: 10.0
Std nTPM: 10.6
Median nTPM: 26.8
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 75.6
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 72.0
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 69.7
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 62.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 61.8
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 58.5
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 55.6
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 53.1
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 50.8
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 50.5
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 49.7
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Brain - Putamen (basal ganglia)
Average nTPM: 33.3
Samples: 205

Max nTPM: 66.2
Min nTPM: 12.3
Std nTPM: 10.5
Median nTPM: 32.3
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 66.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 62.1
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 61.5
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 58.1
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 56.5
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 56.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 55.3
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 55.1
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 53.4
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 52.0
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 51.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 94.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 69.7
FF:10164-103B2 76 years, female 69.7
Globus pallidus
Scaled Tags Per Million: 94.8
FF:10161-103A8 76 years, female 105.3
FF:10175-103C4 60 years, female 84.4
Nucleus accumbens
Scaled Tags Per Million: 61.1
FF:10037-101F1 23-56 years, mixed 61.1
Putamen
Scaled Tags Per Million: 56.3
FF:10176-103C5 60 years, female 56.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 38.9
Pig sample Sample description nTPM
Caudate
nTPM: 19.5
Samples: 4

Max nTPM: 20.7
Min nTPM: 17.8
Sample A Female 20.6
Sample B Female 17.8
Sample C Male 20.7
Sample D Male 19.0
Putamen
nTPM: 38.9
Samples: 4

Max nTPM: 57.1
Min nTPM: 24.8
Sample A Female 57.1
Sample B Female 24.8
Sample C Male 36.1
Sample D Male 37.5
Septum
nTPM: 27.1
Samples: 4

Max nTPM: 31.2
Min nTPM: 22.8
Sample A Female 31.2
Sample B Female 22.8
Sample C Male 24.4
Sample D Male 29.9
Ventral pallidum
nTPM: 31.7
Samples: 4

Max nTPM: 39.0
Min nTPM: 21.8
Sample A Female 21.8
Sample B Female 28.2
Sample C Male 37.6
Sample D Male 39.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 13.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 13.5
Samples: 4

Max nTPM: 15.5
Min nTPM: 11.9
Sample A Male 13.6
Sample B Male 12.8
Sample C Female 15.5
Sample D Female 11.9
Septum
nTPM: 10.7
Samples: 4

Max nTPM: 14.3
Min nTPM: 8.2
Sample A Male 8.2
Sample B Male 9.2
Sample C Female 11.2
Sample D Female 14.3
Ventral forebrain
nTPM: 9.8
Samples: 4

Max nTPM: 10.9
Min nTPM: 9.0
Sample A Male 10.9
Sample B Male 9.0
Sample C Female 9.1
Sample D Female 10.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
76003323 Antisense, RP_060608_02_B02, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.2
76003323 Antisense, RP_060608_02_B02, Mouse strain C57BL/6J (56 days, male) 0.2

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