MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:44.0 nTPM
HPA:44.0 nTPM
GTEx:20.5 nTPM
FANTOM5:51.0 Scaled Tags Per Million
Pig:29.0 nTPM
Mouse:4.6 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 44.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.4
2828 Female, age 72, unknown 36.2
1870 Female, age 42, unknown 31.4
2586 Male, age 75, left hemisphere 30.8
1827 Male, age 72, unknown 26.4
2666 Male, age 74, left hemisphere 24.8
1833 Male, age 53, unknown 22.9
1830 Male, age 51, unknown 21.1
2411 Female, age 72, unknown 20.7
2219 Male, age 76, both hemispheres 16.6
2019 Male, age 18, unknown 13.3
Dorsal raphe nucleus
nTPM: 35.0
2016 Female, age 72, unknown 46.3
1828 Male, age 53, unknown 39.2
2298 Female, age 72, unknown 36.7
2047 Male, age 72, unknown 32.2
2750 Male, age 76, both hemispheres 20.5
Inferior colliculus
nTPM: 32.6
1848 Female, age 42, unknown 36.7
2849 Male, age 72, unknown 35.5
2097 Female, age 72, unknown 32.3
1890 Male, age 53, unknown 26.1
Median raphe nucleus
nTPM: 21.2
2220 Male, age 76, midline 21.2
Pedunculopontine tegmental nucleus
nTPM: 24.5
1921 Female, age 85, both hemispheres 29.7
2334 Male, age 80, both hemispheres 24.4
2338 Male, age 61, both hemispheres 19.4
Periaquaductal grey, anterior
nTPM: 33.6
1795 Male, age 51, unknown 38.2
2502 Female, age 75, unknown 32.1
1947 Male, age 18, unknown 30.5
Periaquaductal grey, dorsal
nTPM: 43.5
1840 Male, age 53, unknown 52.0
2850 Male, age 76, both hemispheres 44.5
1831 Male, age 72, unknown 43.1
2464 Female, age 72, unknown 34.5
Periaquaductal grey, lateral
nTPM: 44.0
2053 Male, age 18, unknown 60.7
2140 Male, age 76, both hemispheres 41.0
2272 Male, age 74, both hemispheres 30.2
Pretectal area
nTPM: 31.0
2273 Male, age 74, both hemispheres 42.7
2825 Male, age 18, unknown 40.7
2224 Female, age 72, unknown 40.4
1944 Female, age 72, unknown 33.1
2667 Female, age 75, unknown 32.0
2316 Male, age 76, right hemisphere 31.1
1816 Male, age 51, unknown 29.0
2407 Male, age 75, both hemispheres 26.7
1815 Male, age 53, unknown 25.8
1817 Female, age 42, unknown 23.0
2007 Male, age 72, unknown 16.1
Red nucleus
nTPM: 21.6
2823 Male, age 76, right hemisphere 28.0
2503 Female, age 72, unknown 27.7
2725 Female, age 75, unknown 27.1
1821 Female, age 72, unknown 24.3
2769 Male, age 72, unknown 24.1
1954 Female, age 42, unknown 22.9
2227 Male, age 72, unknown 21.2
1904 Male, age 53, unknown 19.8
1865 Male, age 51, unknown 17.6
2588 Male, age 74, left hemisphere 17.1
2584 Male, age 75, left hemisphere 15.7
2785 Male, age 18, unknown 13.7
Substantia nigra
nTPM: 25.7
2699 Male, age 18, unknown 41.6
1916 Female, age 42, unknown 27.7
1851 Male, age 51, unknown 25.2
2241 Male, age 72, unknown 24.8
2665 Male, age 74, both hemispheres 24.8
2409 Female, age 72, unknown 24.1
1889 Female, age 72, unknown 23.9
2590 Female, age 75, unknown 23.5
1941 Male, age 53, unknown 21.7
2583 Male, age 75, right hemisphere 20.2
Superior colliculus
nTPM: 31.9
1995 Male, age 72, unknown 43.9
2664 Male, age 75, both hemispheres 36.3
1839 Male, age 51, unknown 35.0
1796 Male, age 53, unknown 33.9
1913 Female, age 42, unknown 32.5
2587 Male, age 74, left hemisphere 30.8
2087 Female, age 72, unknown 30.3
2261 Male, age 18, unknown 29.4
2668 Female, age 75, unknown 25.4
1895 Male, age 76, right hemisphere 21.5
Ventral tegmental area
nTPM: 29.0
2021 Male, age 53, unknown 34.4
1915 Female, age 42, unknown 33.9
1942 Male, age 51, unknown 30.9
2410 Female, age 72, unknown 27.0
2218 Male, age 76, both hemispheres 24.1
2223 Female, age 72, unknown 23.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.5
Samples: 139

Max nTPM: 57.8
Min nTPM: 1.9
Std nTPM: 10.1
Median nTPM: 18.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 57.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 49.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 46.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 45.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 43.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 43.3
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 39.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 39.8
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 39.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 39.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 37.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.0
FF:10158-103A5 76 years, female 51.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.0
Pig sample Sample description nTPM
Midbrain
nTPM: 19.6
Samples: 4

Max nTPM: 42.6
Min nTPM: 9.3
Sample A Female 42.6
Sample B Female 15.5
Sample C Male 10.8
Sample D Male 9.3
Periaqueductal gray
nTPM: 29.0
Samples: 3

Max nTPM: 34.9
Min nTPM: 24.4
Sample B Female 24.4
Sample C Male 27.8
Sample D Male 34.9
Substantia nigra
nTPM: 17.4
Samples: 4

Max nTPM: 19.2
Min nTPM: 15.2
Sample A Female 19.2
Sample B Female 17.0
Sample C Male 15.2
Sample D Male 18.3
Superior colliculi
nTPM: 10.9
Samples: 4

Max nTPM: 12.7
Min nTPM: 9.2
Sample A Female 10.9
Sample B Female 10.6
Sample C Male 9.2
Sample D Male 12.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.6
Samples: 4

Max nTPM: 5.0
Min nTPM: 3.9
Sample A Male 4.9
Sample B Male 5.0
Sample C Female 3.9
Sample D Female 4.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68744456 Antisense, RP_050203_02_H11, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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