BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:20.7 nTPM
HPA:20.7 nTPM
GTEx:26.9 nTPM
FANTOM5:188.4 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 20.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 19.5
2289 Male, age 61, right hemisphere 26.7
2288 Male, age 75, left hemisphere 20.4
2846 Female, age 79, unknown 20.1
1781 Male, age 74, unknown 19.6
2290 Female, age 72, unknown 19.5
1854 Male, age 80, left hemisphere 17.7
1857 Female, age 85, left hemisphere 16.8
2481 Female, age 94, left hemisphere 15.3
Claustrum
nTPM: 20.7
2568 Male, age 61, both hemispheres 25.2
2284 Female, age 91, both hemispheres 23.5
2645 Female, age 72, unknown 23.2
2292 Female, age 85, both hemispheres 23.1
1956 Male, age 74, unknown 19.6
2198 Male, age 80, both hemispheres 19.5
2491 Male, age 75, both hemispheres 18.6
2196 Female, age 79, unknown 18.1
2392 Female, age 94, both hemispheres 15.7
Globus pallidus, externus
nTPM: 16.8
2646 Male, age 61, right hemisphere 24.9
2567 Female, age 72, unknown 18.8
2395 Male, age 75, both hemispheres 14.1
2772 Female, age 79, unknown 13.7
1996 Male, age 80, right hemisphere 12.3
Globus pallidus, internus
nTPM: 15.9
2566 Female, age 72, unknown 18.6
2111 Female, age 85, right hemisphere 17.6
2778 Female, age 91, both hemispheres 16.6
1818 Male, age 74, unknown 15.4
2483 Female, age 94, right hemisphere 15.2
2037 Male, age 80, right hemisphere 14.7
2287 Male, age 75, right hemisphere 13.1
Nucleus accumbens
nTPM: 17.8
1783 Male, age 74, unknown 21.2
2824 Male, age 61, right hemisphere 18.7
2732 Male, age 80, right hemisphere 18.0
1806 Female, age 85, left hemisphere 17.4
2391 Female, age 94, left hemisphere 17.3
2698 Female, age 72, unknown 17.0
2286 Male, age 75, left hemisphere 16.9
1856 Female, age 91, right hemisphere 15.6
Nucleus basalis of Meynert
nTPM: 19.8
2569 Male, age 61, both hemispheres 24.2
2821 Male, age 75, both hemispheres 21.1
2484 Female, age 94, left hemisphere 17.5
2393 Male, age 80, right hemisphere 16.2
Nucleus of the diagonal band
nTPM: 18.0
2195 Female, age 85, both hemispheres 19.2
2775 Male, age 80, right hemisphere 18.8
2029 Male, age 61, right hemisphere 17.9
1812 Female, age 91, both hemispheres 17.7
1979 Male, age 74, unknown 16.6
Olfactory tubercle
nTPM: 17.5
2856 Male, age 75, right hemisphere 19.3
1998 Female, age 91, both hemispheres 19.0
1846 Male, age 80, right hemisphere 17.0
2487 Female, age 94, left hemisphere 14.5
Putamen
nTPM: 19.0
2647 Male, age 75, left hemisphere 24.3
1838 Male, age 80, right hemisphere 20.6
2489 Female, age 72, unknown 18.7
1829 Male, age 74, unknown 18.2
1937 Female, age 91, right hemisphere 17.3
2466 Female, age 79, unknown 17.2
2482 Female, age 94, left hemisphere 16.8
Septal nuclei
nTPM: 17.3
1960 Male, age 74, unknown 20.7
2629 Female, age 94, right hemisphere 18.3
2059 Female, age 85, both hemispheres 18.2
2031 Female, age 72, unknown 17.6
2009 Female, age 91, both hemispheres 16.5
2199 Male, age 80, right hemisphere 15.5
2394 Male, age 61, left hemisphere 14.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 26.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 25.8
Samples: 246

Max nTPM: 44.4
Min nTPM: 8.9
Std nTPM: 5.6
Median nTPM: 25.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 44.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 40.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 39.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 39.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 38.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 37.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 36.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 36.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 36.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 35.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 35.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 26.9
Samples: 246

Max nTPM: 50.7
Min nTPM: 10.7
Std nTPM: 6.2
Median nTPM: 26.9
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 50.7
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 50.3
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 47.0
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 43.6
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 41.5
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 41.2
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 38.2
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 38.0
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 37.9
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 37.9
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 37.6
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Brain - Putamen (basal ganglia)
Average nTPM: 25.1
Samples: 205

Max nTPM: 41.4
Min nTPM: 11.2
Std nTPM: 5.8
Median nTPM: 25.0
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 41.4
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 40.0
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 39.5
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 39.4
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 39.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 38.6
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 38.1
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 38.0
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 37.8
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 36.6
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 35.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 188.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 122.6
FF:10164-103B2 76 years, female 122.6
Globus pallidus
Scaled Tags Per Million: 188.4
FF:10175-103C4 60 years, female 237.5
FF:10161-103A8 76 years, female 139.3
Nucleus accumbens
Scaled Tags Per Million: 81.8
FF:10037-101F1 23-56 years, mixed 81.8
Putamen
Scaled Tags Per Million: 117.7
FF:10176-103C5 60 years, female 117.7

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The Human Protein Atlas

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